Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03006 ATGGAGAGTGGAGTCAGTAGTAAGAAAACATCACCTCCATCTTCGCAGCAATTCATTTCTGTTACCACCCCTCTGCTTGATTTGGAAAAGGAAACTGGGGAATCAAGCATAGGAGTGTTTCACGAGAGGGAGATAGAGGATGCTGAGAAATATGAATTGGAAGTTGATGACTCTCCCATTGAGCAAGTGAGGCTAACAGTTCCAATCACTGATGACCCTACTCAGCCGGCACTAACATTTAGGACATGGATTCTGGGGTTGGCATCATGTGTGCTTCTTTCCTTTGTGAACCAATTTTTTGGCTACAGAACCAACCCTTTACAAATCTCTTCAGTTTCAGCACAGATTGCTACACTCCCTCTTGGCAAACTGATGGCTGCAACTCTTCCGACTAAACCAATTCGAGTGCCATTCACGAAATGGTCATTTTCAATGAATCCAGGGCCATTCACTTTGAAGGAGCATGTGCTTATCACCATCTTTGCTACATCTGGATCTAATGGTGTTGATGCAATCAGCATCATCACAATTGTTAAGGCTTTCTATCACAGGAGCATCCATCCAGTAGCAGCTTATTTGTTAGTAATGTCAACCCAAATGCTTGGATATGGATGGGCTGGGATTTTTAGAAGATTCCTAGTGGACTCCCCTTTTATGTGGTGGCCTGAAAACCTTGTGCAGGTGTCTCTATTCAAGGCATTTCATGAAAAAGAAAAAAGGCCTAAAGGAGGATACACTAGGATGCAATTCTTTTTCCTAGTCTTTGTAGCTAGCTTTGCCTATTACACTCTTCCAGGGTACCTTTTCCAAGCAATATCAACCATCTCCTTTGTTTGCCTGATTTGGAATGATTCCATCACAGCCCAACAAATTGGTTCAGGCATGAGTGGAATTGGAATAGGCTCATTTGGCCTCGATTGGAACACTGTTGCAGCCTTCTTAGGTAGTCCTTTAGCTGTACCTGGCTTTGCTATCGTCAACATGTTAATAGGATTTATGCTGGATATGTATGTTCTGGTTCCCCTTGCCTATTGGAGCAATTTATATGATGCCAAAAAGTTCCCCCTCATTAGTTCTCACACGTTTGACTCAACTGGTGCTACATATAATGTTACTCGGGTTCTAAATCCCAGAACTTTTGACATTGATTTGGATAGTTATAACAATTACAGCAAGATCTATCTTAGTATAACATTTGCCTTTGAGTATGGATTAAGCTTTGCAATTTTGACTGCCATTATTTCCCATGTAGTCCTCTTTCATGGAGAAATGATTCTTCAGACGTGGAGGAAGACAACAAGAGCACCAAAAGAACAACTTGGAGATGTCCATACAAGAATTATGAAGAGAAACTATGAACAAGTCCCTGAATGGTGGTTTGCCATCATATTGACCCTTATGGTTGTTGTGGCCTTGGTTGCTTGTGAGAGCTTTGGGAAGCAACTCCAACTGCCATGGTGGGGAATTTTACTTTCTCTAACAATTGCATTAGTGTTCACCTTGCCAATTGGGGTTATTGTAGCTACAACAAACATAAAAACAGGACTCAACGTGATTTCAGAGTTAATAATTGGATTCATTTACCCAGGAAAACCCCTTGCTAATGTAGTCTTCAAGATTTATGGACATGACAGCATGGTACAGGCAGTTTTGTTTCTTAGTGACTTCAAATTAGGCCACTACATGAAAATTCCTCCTAAATCTATGTTCATTGTTCAGCTTGTAGGCACAGTTGTTGCTTCAACTGTCTACTTTGCCACATCTTGGTGGCTTCTGACGTCTATTGAAAACATTTGTGATGAAGCATTGTTGCCAAAGGGTAGTCCATGGACATGCCCTGGTGACGATGTGTTCTATAATGCTTCAATCATATGGGGAGTTGTAGGACCACAGAGAATGTTTGGCAAGGATGGTGTTTACCCTGGGATGAATTGGTTTTTCCTCATTGGTCTACTTGCTCCTATTCCAGTGTGGTTGCTTTCTCGTAAATTCCCCAACCACAAGTGGATTGAACTCATCAACATTCCCATTATCGCTGCAGGTGCATCCAACATTCCACCAGCCAGATCAGTGAACTATATTACATGGGGCGTTGTTGGAATCGTCTTCAATTTTTATGTTTATAGAAAGTTTAAGGCATGGTGGGTCCGGCATACTTACATCCTTTCAGCTGCTTTAGATGCTGGAGTTGCTTTCATGAGTGTGATCCTTTATTTCACCCTTCAATCTAATGGTATTTTTGGTCCAGCCTGGTGGGGTCTTGATGCAGACCACTGCCCTTTGGCCAAATGCCCCACAGCTCCAGGTGTATATGCCGAGGGATGCCCTCTTCCTTGA 2337 0.4223 MESGVSSKKTSPPSSQQFISVTTPLLDLEKETGESSIGVFHEREIEDAEKYELEVDDSPIEQVRLTVPITDDPTQPALTFRTWILGLASCVLLSFVNQFFGYRTNPLQISSVSAQIATLPLGKLMAATLPTKPIRVPFTKWSFSMNPGPFTLKEHVLITIFATSGSNGVDAISIITIVKAFYHRSIHPVAAYLLVMSTQMLGYGWAGIFRRFLVDSPFMWWPENLVQVSLFKAFHEKEKRPKGGYTRMQFFFLVFVASFAYYTLPGYLFQAISTISFVCLIWNDSITAQQIGSGMSGIGIGSFGLDWNTVAAFLGSPLAVPGFAIVNMLIGFMLDMYVLVPLAYWSNLYDAKKFPLISSHTFDSTGATYNVTRVLNPRTFDIDLDSYNNYSKIYLSITFAFEYGLSFAILTAIISHVVLFHGEMILQTWRKTTRAPKEQLGDVHTRIMKRNYEQVPEWWFAIILTLMVVVALVACESFGKQLQLPWWGILLSLTIALVFTLPIGVIVATTNIKTGLNVISELIIGFIYPGKPLANVVFKIYGHDSMVQAVLFLSDFKLGHYMKIPPKSMFIVQLVGTVVASTVYFATSWWLLTSIENICDEALLPKGSPWTCPGDDVFYNASIIWGVVGPQRMFGKDGVYPGMNWFFLIGLLAPIPVWLLSRKFPNHKWIELINIPIIAAGASNIPPARSVNYITWGVVGIVFNFYVYRKFKAWWVRHTYILSAALDAGVAFMSVILYFTLQSNGIFGPAWWGLDADHCPLAKCPTAPGVYAEGCPLP 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03006 778 Pfam OPT oligopeptide transporter protein 78 740 IPR004813 GO:0035673
Vimu6g03006 778 PANTHER ISP4 LIKE PROTEIN 52 776 IPR004648 GO:0055085
Vimu6g03006 778 NCBIfam OPT family oligopeptide transporter 62 742 IPR004813 GO:0035673
Vimu6g03006 778 NCBIfam small oligopeptide transporter, OPT family 56 743 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03006 Vimu-Chr6 26569302 26571863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03006 42 777 Organic Solute Cotransporters AT4G26590 65.536 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03006 - - gmx:100820498 1400.96