Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03005 ATGAACAGCATCTCATCGCTCACGTTTGATTCTCACGCGATATGCAACCCTCACCGCCCCTTTTCATCTCGCCGCTTTCATCTCGCTCGAAACCTTGTCGTATGCTCCGCCAAGCCCGTCGCGCCTCCTCCCACCAAGCTCGCCGCCGCCGACACATCCGCCGCCCGCATCGGCTCGCTGAGCCAGGTCTCTGGCGTGCTGGGTTGCCAGTGGGGTGATGAGGGCAAGGGTAAACTCGTCGACGTCTTGGCCCAACACTTCGAAATCGTTGCTCGCTGTCAGGGTGGAGCTAATGCTGGGCATACTATCTACAATGCAGAAGGGAAAAAGTTTGCGCTTCATCTTGTTCCTTCTGGTATTCTGAACGAGGATACTCTCTGTGTTATTGGGAATGGGGTTGTAGTGCACCTGCCGGGGTTGTTTAAAGAGATTGATGGTCTTGAGTCAAGTGGGGTCTCTTGCCAGGGAAGGATATTGATTTCTGATCGTGCTCACCTGCTGTTTGATTTCCACCAAGTAGTGGATGGATTGAGGGAAGCCGAGCTTGCTAAATCTTTCATCGGCACCACCAAGAGAGGCATTGGACCCTGCTACTCCAGCAAGGTTAACCGCAATGGCATCAGAGTGGGTGATTTGAGGCACATGGATACTTTCCCCCATAAGCTTGATGTTATATTGTCAGATGCAGCGTTAAGGTTCAAAGATTTCAACTATGGTCCGGACGTGCTAAGGGAAGAAGTTGAAAAATACAAGAGATATGCTGAGCGGTTGGAACCATTTATTGCTGATACTGTGCATGTCATGAATGAGGCAATAACACAGAAGAGGAAGATTTTGGTTGAAGGAGGACAAGCAACAATGTTGGACATTGATTTTGGAACTTATCCTTTTGTTACATCGTCTAGCCCATCAGCAGGCGGGATATGCACTGGTCTTGGTATTGCTCCAAGGGTGATTGGTGATTTAATAGGAGTGGTGAAGGCATACACTACAAGAGTTGGTTCCGGACCTTTTCCTACTGAAATTCTGGGTTCAGGGGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGGCGGTGTGGCTGGCTCGATATAGTAGCCTTGAAATACTCATGTCAGATAAATGGTTTTTCATCGTTGAATCTTACCAAGCTGGATGTTTTATCAGATCTTGAAGAAATTCAGTTGGGTATTTCTTACAAACTTGATGATGGCACCTTAATCACATCATTTCCCTCTGACCTCCGTCTTCTTGAGCAATTGAAGGTGGAATATGAAGTACTTCCAGGATGGAAATCTGATATTTCTTCCATAAGAAACTACTCTGACCTTCCAAAAACTGCACGGCAATACGTGGAAAGGGTAGAGGAACTTGTGGGGGTCCCTATTCACTACATTGGTGTTGGACCTGGACGCGATGCCCTTATATACAAATGA 1458 0.4787 MNSISSLTFDSHAICNPHRPFSSRRFHLARNLVVCSAKPVAPPPTKLAAADTSAARIGSLSQVSGVLGCQWGDEGKGKLVDVLAQHFEIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESSGVSCQGRILISDRAHLLFDFHQVVDGLREAELAKSFIGTTKRGIGPCYSSKVNRNGIRVGDLRHMDTFPHKLDVILSDAALRFKDFNYGPDVLREEVEKYKRYAERLEPFIADTVHVMNEAITQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTEILGSGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYSCQINGFSSLNLTKLDVLSDLEEIQLGISYKLDDGTLITSFPSDLRLLEQLKVEYEVLPGWKSDISSIRNYSDLPKTARQYVERVEELVGVPIHYIGVGPGRDALIYK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03005 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 484 IPR027417 -
Vimu6g03005 485 ProSitePatterns Adenylosuccinate synthetase GTP-binding site. 70 77 IPR018220 GO:0005525
Vimu6g03005 485 Hamap Adenylosuccinate synthetase [purA]. 1 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vimu6g03005 485 Gene3D Adenylosuccinate Synthetase, subunit A, domain 1 66 325 IPR042109 -
Vimu6g03005 485 Pfam Adenylosuccinate synthetase 66 483 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vimu6g03005 485 Gene3D Adenylosuccinate Synthetase, subunit A, domain 2 162 260 IPR042110 -
Vimu6g03005 485 NCBIfam adenylosuccinate synthase 66 483 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vimu6g03005 485 ProSitePatterns Adenylosuccinate synthetase active site. 193 204 IPR033128 -
Vimu6g03005 485 Gene3D Adenylosuccinate Synthetase, subunit A, domain 3 326 485 IPR042111 -
Vimu6g03005 485 FunFam Adenylosuccinate synthetase, chloroplastic 162 260 - -
Vimu6g03005 485 PANTHER ADENYLOSUCCINATE SYNTHETASE 50 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vimu6g03005 485 CDD AdSS 62 484 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vimu6g03005 485 SMART adenylsucc_synt 63 484 IPR001114 GO:0000166|GO:0004019|GO:0006164
Vimu6g03005 485 FunFam Adenylosuccinate synthetase 326 485 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03005 K01939 - gmx:100792329 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03005 6 26564598 26567274 Vimu6g03005 6 26564598 26567274 ECH