Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02992 ATGCCACTAAAGACTGGGAATCTTAAAATGAAGAACCCACTTATCTTCCTCATATTCCTACTTCTCACCCAATCCCTTCTCGCCACGTCATCACCGTTAAACATGATCCCAGTCAACCTCTCCGTCGCCGACTTCGGCGCCACCGGCGACGGTAGCTGCTACGACACCGAACCGATCCAATCGGCCATCAACTCCTGTCCGGAGGGTGGTCCCTGCCACGTCATCTTCCCGGCACCGGGAAAGTACCTTACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTAGTTGTGGAGCCTGGTGCTACCATCCTGGGCGGCACCAGGCTTGAGGACTACCCGAAGGAGTTCTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGAACGTGGGAATCCGCGGCGGCGGAGTGGTGGATGGTCAGGCTACGAAGTTCGTAGTGAGAGAAGATCCGAGGAAGAACGTGATGGTTAGTTGGAACCAAACTGGGGCTTGCTTGGGAGACGAATGCAGACCTAGACTCATTGGATTTATTGGTTGCAACAATGTTGAAGTTTCTAACATCACTCTCAACCATCCTGCTTATTGGTGTTTGTCTACACGCAAAGGCGATTTGAGTTTGAAAGATAAACGAGTGAAGGGTACTGGGTCCCATAACTTACACTTGGTCCGGAGTAATAACATATCCATTAAAGATATTGCAATTAATGGAGACTTTAACATACCAAACAATGACGGGATTGATATTGAGGACTCAAACAACACAGTAATCACTCGATGCCACATCGATACCGGGGATGATGCAATCTGTCCAAAGACATACACATGTCCTGTTTACAACCTTACAGTCACCGATAGTTGGATTCGATCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATCACTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGCAAGTGACATTGTATTCTCAAACATTAATATCAGCACAAGATATTATGACCCGTTATGGTGGGGTAGAGGAGAGCCTATCTATGTAACGAGTTGTCCCCGAGACTCAACCTCAAAGGAGGCTTCAATATCTGATGTACATTTCGTTAACATCACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGCTTAGAAACTTGAGATTCATCAACATGGACATTACATACAGAAGGTTCACCAATTATTCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTAGTTAAACACAGGACTGCGGGCATAATGATGGAGCACATTGAAGGGCTTGAGGTTAAAAATGTTGAAATGAGATGGTCAAACAATCAACTAGAGCAGTGGAATAATCCTTTGGAGTTCAGACCGTCTACTGTGAATAATATATCTTTCCTTAATTTTAGTTCTGGTTTGTATACAGATGGCAAATTAAATTATTAA 1491 0.4514 MPLKTGNLKMKNPLIFLIFLLLTQSLLATSSPLNMIPVNLSVADFGATGDGSCYDTEPIQSAINSCPEGGPCHVIFPAPGKYLTATVFLKSGVVLVVEPGATILGGTRLEDYPKEFWRWYVVVAENATNVGIRGGGVVDGQATKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFIGCNNVEVSNITLNHPAYWCLSTRKGDLSLKDKRVKGTGSHNLHLVRSNNISIKDIAINGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTCPVYNLTVTDSWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGIGFQIRDGGNASDIVFSNINISTRYYDPLWWGRGEPIYVTSCPRDSTSKEASISDVHFVNITANSENGIFLSGSKRGLLRNLRFINMDITYRRFTNYSGGLLDYRPGCQELVKHRTAGIMMEHIEGLEVKNVEMRWSNNQLEQWNNPLEFRPSTVNNISFLNFSSGLYTDGKLNY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02992 496 Gene3D - 24 421 IPR012334 -
Vimu6g02992 496 Pfam Glycosyl hydrolases family 28 120 412 IPR000743 GO:0004650|GO:0005975
Vimu6g02992 496 PANTHER PECTIN LYASE-RELATED 34 456 - -
Vimu6g02992 496 SUPERFAMILY Pectin lyase-like 18 425 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02992 38 490 Glycoside Hydrolase AT3G57790 65.011 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02992 - - gmx:100794954 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02992 6 26390497 26394234 Vimu6g02992 6 26390497 26394234 ECH