Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02967 ATGACGGAACCAACGGAGCCATGCACGTCTTCTTCGTTGGCGAGGGACTCTAGCACCGTGATTCACCCAAGGCGGGAGCCCTTTGAGCATGGCCTCTTGCCAATCCCACGCCTCATCTTCTCCGACCCCGCGCAAACCCTAATTCCGTTGAAGCGGAAGCTTCTAGAGTTATCCTCCAACCATCGAGTAGGCTCGGCGGCCATCTCAGAGGCATTGCAGATCTCCGTTGAGCACGCCGGACTCGTCCTCGATACGCTCGCCTCGATTCTGCCCTCCGACTCCGAACCTCTTGTCGCCGCAAAGCTCGGCGAAGCCGATTCCGTTGGCGTCGACGTGCATGATCTGGTACTGTTTCTCTACATTCAATCCTACAAGAGGCTCCTCCCGCGGACGCACAAGGACTCCGCTGCCGTCGCCGATGTCTGGCCTTCCACTTCCGCCTTCGATGGCTACTTGTCCGCCCTCTCGCCGCTTCAGCTTGTTCGCAGCAACAGTAGGCGGTTTTTGCCATCGCAGACTGATGAAGAGGCGCATCAATTGTCATATCTGCAAAAACACTTGGCTAACATTCTGTCTCTTCTAGCAGAGCCTGTGGATGGAGAAGGCGAAGAATCTCTGGTTTTAACCATGGATAGTTTTGAGCACCTTGGGTTTCTAATTCAGTTTGGTGACAAGGGATCTGAAGGAAATTCTTTCAGTCAATTTTCTCCCTTTTTTGCAAATTCAGACCCTGACATGCCTGCTGTTCCCGTTCCTGCTGCTCAAGTTCATGATTGGCTTCATCAAAATATTGTTGCTGCTTTGGAATATATTTCTGAACGGACTTCTTCTAAGGAAAATGGGCCAGCTTCTCCTTCTGATCACGATGTTGCTATGACTGATGCATCCAGTGCCTCAGTTAATAAGGTCTCAACCAGTACCAGAGGTGCAAGTTTCATTGAAGGGATTTCCAAATCATCATATATGAAGCATGCACCTGACATTAAAGGTTCTAATGTTAAGGTTCTAAATTGCCACGAGTCTGCCATATACATTTTAGCACCTTTGAGATATGCTACTGTCTATGGGTGTTCAGATGCAACAATAGTTCTGGGAGCAGTAGGCAAGGCTGTGAGAGTAGAACATTGTGAAAGAGTTCATGTAATCGTAGCAGCAAAACACATTTGTATTGCTAATTGTCGGGAATGTGTTTTCTTTTTGGGAGTGAACCAGCAACCTCTTATTGTTGGTGATAACCATAAACTGCAGGTGGCTCCCTATAATACTTTTTATTCCCAATTGGAGGAGCATATGGACGAAGTTGGAATTGTGCCCACAGTTAACCGATGGGATGAGCCTCTAGCATTGGGCATGGTTGATCCGCATGATTCATTGTCTCATCCAGCTGGTGTCTCTGATGTTCAAGCTGAGTCTGCTATGCGGGTGGACCCAGATCAGTTCACTTATTTTGTGCAAAAAAATTTAGAGGAGATAAGGCAGCTCTTACGAGAAGCACCTTTAGAAGAAAGTCGCAAACGAGAATTGTCATCTGCTCTCCATGTCTACTTCAGGGACTGGTTATATGGTAACTATCAGTTTTTGCCTTTTAGGCCCAATGTAACGGATAATGGCAATAACTTTTTCTCTTTTTTTTGTAGCTTCCGGAAACATTCGTCAGCTTTATTTTCTACAAGGCGATTGATCTTTGTCAGACAATGCAATGGCACAGTTAATGGTACAGGAACGAGGTTTCTGGTTTCCTTTTTGCACTTCCTCTTCTATTCCCCCTTGCCAATTCTATTGGCGGCATAG 1791 0.4685 MTEPTEPCTSSSLARDSSTVIHPRREPFEHGLLPIPRLIFSDPAQTLIPLKRKLLELSSNHRVGSAAISEALQISVEHAGLVLDTLASILPSDSEPLVAAKLGEADSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFLPSQTDEEAHQLSYLQKHLANILSLLAEPVDGEGEESLVLTMDSFEHLGFLIQFGDKGSEGNSFSQFSPFFANSDPDMPAVPVPAAQVHDWLHQNIVAALEYISERTSSKENGPASPSDHDVAMTDASSASVNKVSTSTRGASFIEGISKSSYMKHAPDIKGSNVKVLNCHESAIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVHVIVAAKHICIANCRECVFFLGVNQQPLIVGDNHKLQVAPYNTFYSQLEEHMDEVGIVPTVNRWDEPLALGMVDPHDSLSHPAGVSDVQAESAMRVDPDQFTYFVQKNLEEIRQLLREAPLEESRKRELSSALHVYFRDWLYGNYQFLPFRPNVTDNGNNFFSFFCSFRKHSSALFSTRRLIFVRQCNGTVNGTGTRFLVSFLHFLFYSPLPILLAA 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02967 596 SMART carp 376 410 IPR006599 -
Vimu6g02967 596 SMART carp 338 375 IPR006599 -
Vimu6g02967 596 MobiDBLite consensus disorder prediction 276 297 - -
Vimu6g02967 596 ProSiteProfiles C-CAP/cofactor C-like domain profile. 285 436 IPR017901 -
Vimu6g02967 596 Gene3D - 310 473 IPR016098 -
Vimu6g02967 596 Pfam Tubulin binding cofactor C 331 445 IPR012945 -
Vimu6g02967 596 PANTHER UNCHARACTERIZED 18 484 IPR039589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02967 Vimu-Chr6 26148770 26160710 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02967 K16810 - gmx:100819271 919.457