Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02885 ATGAAGCGAGTGTGGAGATTCTCTTCACACGCAACCGGTGTTCAGTTGTCATTCTTCCAATCCCATTTCAATGGATTCTCCATATCCAAACGCATTCCCTCCTTCTCCACCGTGTTATCTTATCGCCAGCTCAACACGGTGTCAGACACGTTCTCTCACCTCATTCCATTGTTCACCGTAAATGCTTGTTCTTCAACTTCAACCAAAAAGGATCTCATCAACGACGTCACTATTCTTAAGAATGAACTAATTCGGGATTCCCCCGACTATGTTCAGGTTCAAAGCATTTTGGACTATAAGTATGACGATCTCAGTAGCCGCTACCCCAAGGGATATGTGTTCTCGGAACTTATGTATCAATTGAAATCAAATCCTTCCCTTGCTCTTCAGGTGTTTAACTGGAGAAGGAAAAAATGTAGTGCTGAAAACCCTATGGATACGAATGAGTACTCAAAGGGTATAATAGCTGCAGGTAGATCTGGGAATATTCATTTTGCTATTCATCTCTTTAAGGAGGCTGCTACCAAAGGTGTCAAGACGACTAGAACTTACAATGCGCTAATGAGTGCCTTCTCGGTCAATGGTCTTGCTGAGTCCTGTCAGTCCTTGTTTTGTGATCTGAAGAGGGATTTAACCTGCGATCCTTCTATTGTCACATACAACATTCTCATATCTAGTTTTGGTAGCTTGATGCTGGTTGATCACATGGAAGCAACATTCCGTGAGATGCAAAAGTTAGACCTTGCCATGAATATCAGCACTTATAATAACTTAATTGTTGGATATATCACAGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGAAGTCGAGCCCTGTCCAGCCTAACATGAAAACCTACCTGCTAATGCTTCGTGGGTATGCAAATTCAGGTAACCTGGAAAAGATGGAAGAGACGTACTCCATTGTAAGGGATCATGTAAATGAACATGAAATTTCATTAATCAGAAATATGATATGTGCCTATTATAGAAGTTCGGAAGCAGATAAACTTAAGAAGATAGAGTTGCTATTGAAGCTTATTCCAGAAGAGGAGTACAAACCATGGTTAAATGTGTTGATGATTACACTCTATGCCAAGGAAGACTTGTTAGAGAAGATGGAGAATGCTATAAATAAGGCATTTGAACGTAGAACATCTATTAGAAGCATGGGTATCTTGAGACGCATTGCTGCAACTTATTATCGGTGCAATGCTGTAGAAAAGCTAGAAAATTTCGTGAGACGTGCTGAAATCTCTGGGTGGAGTACCTGCCGCTCCTTATATCATTGTAAACTGGTCATGTATGGGTCAGAGAAGCCCTTACATGAATTGTATCGTGTCCTTGAGGGGATGGAAAATGCCAAACTTGCTTGTACGAAGAAAACATTATGGATAATGCACAAAGCTTACAGCAACCGTGGCCAGAGTCCCATGGTTTTGAAAACACTGGGGCTAATGTTCAAACATGGTTACGAATTTCCTTTGGACGCATTTCCATCATGA 1515 0.4099 MKRVWRFSSHATGVQLSFFQSHFNGFSISKRIPSFSTVLSYRQLNTVSDTFSHLIPLFTVNACSSTSTKKDLINDVTILKNELIRDSPDYVQVQSILDYKYDDLSSRYPKGYVFSELMYQLKSNPSLALQVFNWRRKKCSAENPMDTNEYSKGIIAAGRSGNIHFAIHLFKEAATKGVKTTRTYNALMSAFSVNGLAESCQSLFCDLKRDLTCDPSIVTYNILISSFGSLMLVDHMEATFREMQKLDLAMNISTYNNLIVGYITAWMWDDMEKVFQMLKSSPVQPNMKTYLLMLRGYANSGNLEKMEETYSIVRDHVNEHEISLIRNMICAYYRSSEADKLKKIELLLKLIPEEEYKPWLNVLMITLYAKEDLLEKMENAINKAFERRTSIRSMGILRRIAATYYRCNAVEKLENFVRRAEISGWSTCRSLYHCKLVMYGSEKPLHELYRVLEGMENAKLACTKKTLWIMHKAYSNRGQSPMVLKTLGLMFKHGYEFPLDAFPS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02885 504 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Vimu6g02885 504 Gene3D Tetratricopeptide repeat domain 70 246 IPR011990 GO:0005515
Vimu6g02885 504 Gene3D Tetratricopeptide repeat domain 247 316 IPR011990 GO:0005515
Vimu6g02885 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vimu6g02885 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Vimu6g02885 504 PANTHER EXPRESSED PROTEIN 47 503 IPR044179 GO:0003729
Vimu6g02885 504 Pfam PPR repeat family 251 299 IPR002885 -
Vimu6g02885 504 Pfam PPR repeat family 180 227 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02885 159 343 Miscellaneous Gene Families AT4G11690 24.352 1.52e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02885 - - gmx:100792116 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02885 6 25453746 25455606 Vimu6g02885 6 25453746 25455606 ECH