Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02883 ATGAAGAAAGGAAAGGGTAAGAATAGCGGCTTGTTGCCAAATTCACTGAGGATAATTTCTCTGTGCCTAAAGACTGTGTCAACGAATGCCACCACAGTTGCTTCTACTGTGCGCTCCGCCGGCGCCTCGGTCGCCGCTTCAATTTCCTCTTCCGAGGATCACAAGGATGAGGTAACCTGGGCTGGTTTTGATACACTGGAACTTGATCCATCAAACTTCAAACGCGTTCTTTTACTTGGTTATCTGAATGGATTTCAAGTTCTTGATGTGGAAGATGCCTCTGGCTTCAGTGAACTGGTCTCAAAGCGTGATGGTCCAGTTTCCTTTCTACAGATGCAGCCCTTACCTATCGGTGGTGATGACCAGGAGGGACTCAGAAAGTCGCACCCTTTACTGTTGGTAGTTTCTGGGGATGGTAATAGCAATGTTAACCGGAACAGTACTTGTTCGAGTGGTTTAGAAAGGGATGACAACGTTGAGATGCATTCTGGAAACAATGTCAACTTTTCAACAACTGTTCGGTTTTACTCCATGAAGTCTCACTGTTATGTTCGTGTTCTGAAGTTCCGTTCCACCGTGTGTATGATCAGATGTAGTTCACGGATAGTAGCAGTTGGTCTTGCCACACAAATCCACTGCTTTGATGCCGTAACTCTTCAGAATAAGTTCAGTGTTCTCACTTATCCTGTTCCTCAGTTAGCTGGAAAAGGAACAACTGGTGTTAATGTTGGTTATGGTCCCTTGGCTGTGGGTCCGAGGTGGTTGGCATATGCTTCTAACAGCCCCCTTCCCTCTAATTTAGGTTGCTTAAGCCCTCAAAACATCAGTGCTTCAGCAGGAATTAGTCCATCAATTACTCCAAGCAATGGTAGTTTTGTGGCTCGTTATGCAGTGGAGTCCAGTAGACATTTAGCTGCTGGAATAATCAAATACTGTCACGAGCTTCTTCCTGATGGCTCCTCCTCACCAATGCCATCAAATTTAGGTGTGAAAGTCAATAGGGTTACAGGAACTGACGCAGATAATGTGGGCATGGTAGCCGTTAGGGATTTTGTTTCCGAAATTATCATATCACAATTCAAAGCTCACAGTAGTCCTATTTCTGCACTATGTTTTGATCCTAGTGGGACCCTTCTAGTTACTGCATCGGTCTATGGGAATAACATTAATATATTTCGTATAATGCCATCATTCACATGCAAGAGTTCAGGAATTCCAAGCTCAAATTGGAACTCTTCTCATGTGCATCTTTATAAACTTCATCGTGGAATAACACCAGCTATGATTCAGGATATCTGTTTCAGTAACTTTAGTCAGTGGATTGCAATTGTCTCCTCCAAGGGTACATGTCATCTGTTCATCTTATCACCCTTTGGAGGTGATACTGGTTTTCGAATTATAAGTTCTCAAGGTGAAGAACCGTCCCTACTTCCAGTTTTTCCTCTACCTTGGTGGTATACGCCGGGTTCCATTTCTTATCAGCAATCTTTGCCTCCCCCAGCACCCGTTGTCCTTTCTGTGGCTAGCCGGATAAAATATAGTAGTTTTGGATGGCTTAATACTGTTCACAATTCTGCTGCAAATTATACAGGAAAAGTTTTTGTTCCATCTGGTGCTATCGCTGCTATCTTTCATAATTCCTTATCCCACTCGCAGCTTAACTTGAAGGCAAACCCCTTAGAGCATATATTGGTATATACGCCTTCAGGTCATGTTGTTCAACATGAACTTCTGCCATCAGTTGGTTCAGAAACAAGTGATAGTAGTTTGACAAACCAGTCGACTTCAATCCTGCATATGCAGGAAGATGAATTCAGAGTCAAAGTTGAACCTATTCAATGGTGGGATGTCTGTAGAAGGTCAGAATGGCCAGAAAGAGGGGATACTTGCATCAATACCCTTGATAGACAAGGAAGTATTGAGAGAGTTCAAGAGAAAACAGGTTATAGTGACATCCCTGGATCGGATTTTTTGGGTATAAGTGATGGGGCAGAGGAAAAGATGATAAAATCTTCTAGTGAAAATATGCAAGAGAGGTTTCATCGGTATCTGTCAAATGCAGAGGTGCAAGGCAATTTTGGAAGGTTACCCATATGGCAAAAGTCTAAGATTTGTTTCTATTCAATGAGTTCTATGGGAGCTAGTTTCAGTGCTACAGGGGAGTTTGAGATTGACAGGGTCCCTGCTAATGAAATTGAAATAAAGCAGAAGGAGCTGTTGCCTGTTTTTGACCATTTTCATAGTATCAGATCAAGCTGGAATGAGAGAGGCCTAGCTGGGGAAAGACATTTTAGCCCTTCGTCTCCCGTTCCGAATCAAGGTGATTATAAGGAGACTGCGGATGTGACAGTTATTTGTCATTCAAAGCCAGCATCGCTGAGTTCCACTGAAAGCTCTGATGGAGGTTCATCAAGAAGAATTGAAAATCTGCTTGACTTGGATCAAGTTGCTTCCAGTTATCAAATACACAATGAGATGTGCCTGGAAAGAATGGGCACAATCAATGTTGAGCCTTCTCTGAAACATGTCGATTTGAATGCTGACCTTATCGGCAGTCCTATACTCCAGATGAAAAATATAACTTCTGATGGAAGAGATTCTATAGGTTTTGGGATCGAAGAGAACTCGGCATTTGTCTTAGAAGATTCTTCACCCGAGAGTGAATTTGTGGAATCAAAGCAAGATGAAGGTGTTGGGATATCTTTAATAGATGAGCACTGCAAAACACAGGGACATGATGGAAGTGACCTGTTAACTGAAGTTGTAACTGATGATGTTGACAGCAGCAGTAGCCACAACGGAAAAGAACAACTGGAGGAGGATGAAGAGAATGATGAAATGTTTGGTGGTATGTTTGCCTTTTCCGAAGAAGGTTGA 2877 0.4261 MKKGKGKNSGLLPNSLRIISLCLKTVSTNATTVASTVRSAGASVAASISSSEDHKDEVTWAGFDTLELDPSNFKRVLLLGYLNGFQVLDVEDASGFSELVSKRDGPVSFLQMQPLPIGGDDQEGLRKSHPLLLVVSGDGNSNVNRNSTCSSGLERDDNVEMHSGNNVNFSTTVRFYSMKSHCYVRVLKFRSTVCMIRCSSRIVAVGLATQIHCFDAVTLQNKFSVLTYPVPQLAGKGTTGVNVGYGPLAVGPRWLAYASNSPLPSNLGCLSPQNISASAGISPSITPSNGSFVARYAVESSRHLAAGIIKYCHELLPDGSSSPMPSNLGVKVNRVTGTDADNVGMVAVRDFVSEIIISQFKAHSSPISALCFDPSGTLLVTASVYGNNINIFRIMPSFTCKSSGIPSSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFILSPFGGDTGFRIISSQGEEPSLLPVFPLPWWYTPGSISYQQSLPPPAPVVLSVASRIKYSSFGWLNTVHNSAANYTGKVFVPSGAIAAIFHNSLSHSQLNLKANPLEHILVYTPSGHVVQHELLPSVGSETSDSSLTNQSTSILHMQEDEFRVKVEPIQWWDVCRRSEWPERGDTCINTLDRQGSIERVQEKTGYSDIPGSDFLGISDGAEEKMIKSSSENMQERFHRYLSNAEVQGNFGRLPIWQKSKICFYSMSSMGASFSATGEFEIDRVPANEIEIKQKELLPVFDHFHSIRSSWNERGLAGERHFSPSSPVPNQGDYKETADVTVICHSKPASLSSTESSDGGSSRRIENLLDLDQVASSYQIHNEMCLERMGTINVEPSLKHVDLNADLIGSPILQMKNITSDGRDSIGFGIEENSAFVLEDSSPESEFVESKQDEGVGISLIDEHCKTQGHDGSDLLTEVVTDDVDSSSSHNGKEQLEEDEENDEMFGGMFAFSEEG 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02883 958 SMART WD40_4 353 393 IPR001680 GO:0005515
Vimu6g02883 958 SMART WD40_4 411 454 IPR001680 GO:0005515
Vimu6g02883 958 Pfam Breast carcinoma amplified sequence 3 500 741 IPR022175 -
Vimu6g02883 958 SUPERFAMILY WD40 repeat-like 169 453 IPR036322 GO:0005515
Vimu6g02883 958 Gene3D - 22 462 IPR015943 GO:0005515
Vimu6g02883 958 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 2 941 IPR045142 GO:0006914
Vimu6g02883 958 MobiDBLite consensus disorder prediction 924 958 - -
Vimu6g02883 958 Pfam WD domain, G-beta repeat 358 385 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02883 Vimu-Chr6 25423516 25430438 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02883 - - gmx:100785780 1531.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02883 6 25423516 25430438 Vimu6g02883 6 25423516 25430438 ECH