Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02878 TTGAACTGGGAAGTGATCAGGGATCGAAGGATAGAAGTGAACATGGCGATTAAAGAAGATGTGGAAGATGGCACGCAGAGTGGAATAAGAGAGCCACTTGTGGGTGAACAGAAGGACAATCTTGTCCAAGCAACCAAAGGGCATCCATGGATGGTTTACTTTAGTACATTTGTTGCTGTCTGGGGATCTTATGAATTCGGAACATGTATTGGATATTCATCTCCCACTCAAGATGCTATCACAAGGGATCTCGGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGTCTTTTGGGGCAATGGTTGGTGCAATAACTTGTGGACCTATTGCTGATTTTATTGGACGTAAAGGGGCAATGAGAGTGTCCAGTGTTTTCTGTGTTGGAGGCTGGCTTATGATTTACTTTGCTGAGGGCCCACTTCCTTTGGACATTGCGAGGATAGCAACAGGGTATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTCATAGCAGAAATTGCACCAAAAGAACTCCGCATCATTCCCTCTGCTATATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCGAGATGGCTGGCCAAGAGAGGACGCCAAAAAGATTTTGTGGCAGCACTGCAAATACTTCGTGGAAAAGATACTGATATATCTGAGGAGGCAGAGGAAATTCAGGACTATATAACTACATTGGAGCAGCTTCCAAAATCCAGTCTGCTGGAATTGTTTCATAGAAGATATTTGCGCTCTTTAACTATTGGAATAGGCCTTATGATCTGCCAGCAGCTTGGGGGCATCAATGGTGTTTGCTTTTATGTCAGCAGTATTTTTGACCAAGCAGGATTTTCTCCCGCCATTGGGACAATATCATATGCGTGCCTTCAGGTTGTGGTCACAGGTCTTGGAGCAGTCTTCATAGATAAAGCTGGAAGGAAGCCCCTTCTTCTATTATCCGCATCAGGATTGGTGGCAGGATGCATATTTGCAGCAGTTGCATTCTATCTCAAGGTTCACGAGGTGGGTGTTGCGGCAGTTCCAGCACTTGCAGTCACAGGCATACTGGTCTACGTAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTTTGATGTCCGAGATATTTCCTGTGAATATTAAAGGGGTGGCAGGAAGCGTTGCCACATTAACGAACTGGTTTGGTTCATGGTTATGCTCCTACACTTTCAACTTCCTCATCAGCTGGAGCTCCTATGGTACCTTCATTCTTTATGCAGGAATTAATGCATTCGCTATATTATTTATAATTGTTGTGGTGCCCGAAACGAAAGGCAAGAGCTTGGAACAATTACAAGCAGCCATTAACTCATAG 1362 0.4435 MNWEVIRDRRIEVNMAIKEDVEDGTQSGIREPLVGEQKDNLVQATKGHPWMVYFSTFVAVWGSYEFGTCIGYSSPTQDAITRDLGLSLAEYSLFGSILSFGAMVGAITCGPIADFIGRKGAMRVSSVFCVGGWLMIYFAEGPLPLDIARIATGYGMGVFSYVVPVFIAEIAPKELRIIPSAILLLGLFFIPESPRWLAKRGRQKDFVAALQILRGKDTDISEEAEEIQDYITTLEQLPKSSLLELFHRRYLRSLTIGIGLMICQQLGGINGVCFYVSSIFDQAGFSPAIGTISYACLQVVVTGLGAVFIDKAGRKPLLLLSASGLVAGCIFAAVAFYLKVHEVGVAAVPALAVTGILVYVGSFSIGMGAIPWVLMSEIFPVNIKGVAGSVATLTNWFGSWLCSYTFNFLISWSSYGTFILYAGINAFAILFIIVVVPETKGKSLEQLQAAINS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02878 453 Gene3D MFS general substrate transporter like domains 45 176 IPR036259 -
Vimu6g02878 453 Gene3D MFS general substrate transporter like domains 177 453 IPR036259 -
Vimu6g02878 453 Pfam Sugar (and other) transporter 176 449 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu6g02878 453 SUPERFAMILY MFS general substrate transporter 56 447 IPR036259 -
Vimu6g02878 453 ProSitePatterns Sugar transport proteins signature 1. 305 322 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu6g02878 453 CDD MFS_GLUT6_8_Class3_like 53 446 IPR044775 GO:0008643|GO:0051119
Vimu6g02878 453 PRINTS Sugar transporter signature 264 274 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02878 453 PRINTS Sugar transporter signature 353 374 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02878 453 PRINTS Sugar transporter signature 376 388 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02878 453 PRINTS Sugar transporter signature 146 165 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02878 453 PANTHER - 177 448 - -
Vimu6g02878 453 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 440 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02878 Vimu-Chr6 25386555 25390343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02878 15 452 Organic Solute Cotransporters AT5G18840 51.566 4.46e-168 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02878 K03444 - gmx:100785248 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02878 6 25386555 25390343 Vimu6g02878 6 25386555 25390343 ECH