Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02876 ATGGTTTTGGGGCACTTAAATTTGTTGGTAATCGTGGTCTTAATTTTCTTGCTCAGTTCGGGAACAAGTTCGAGCACCACGAGACCGAAATTGATCCCTTACTTCGATTCAAGCCTTTCTAAAGCTGCCTCCTTTATCGGTCACCGAGGCAGTATTGCTGTTCGACAAAGGGTATTCCCTCCTAGACCTGAAGTGAACAAGATCCTATGGTTTCTCTATGCTGACGATACAACTACTACTAAATGTGGCTTGAAAGTCATGGCTGCTTCCACATACCCTTTGCAAAGCGGTAATGCTACCCCTCAGCAACTTGCTGCTTTTTCCAGTCCCCTAGAAGTGATTCTTGGATCTCATGTTGAGCATCAAATGTACTGCCACCTTCTATGTGGCCTTAGGAATCTTGATGTTATAGATGGAATCACAACCCCTTATGCTATAGGCTTGATCAAAGCATTTGGTCTTCTGGAGTCCAAGTGGGGGCAACTGTGTGATGATCTTGACCATGGATTTCCGTGTAATGAAATTTCTGAGGGGGCAATGAGGGAAGCTGTGACTAAGACACTTGGTGGACCTCAGCCAGAACTGGCAAATAGAATAAGATTAATTTGTGAAGGTAACAACTGGGGTGGAATTGTGTGTAGATTGTGGCCAAACACTCGTTATATCAGGTGTGTTACCACTGGAAGCATGAAACAGTACTACCAAAAGCTCAAATACTATGCAGGAGAGGTACCTATTTTAGGAGGAGATTACTTTGCTTCAGAATGCTGTGTTGGTTTAAATTTGGACATGATGCAACCCCCTGAGACAACACGGTTTGTGATATTTCCAACTTTTGCCTACTTTGAGTTTCTTCCATTTAACATGAATGAGGACAATGTTAGCAAAGAAACAGTGGACCTTTGCAGTGTGGAGGTTGGGAAGATGTATGAAGTGGTTGTTACTACTTACAGAGGATTTTATCGCTACCGTTTGGGCGATATAGTGAGAGTTGTTGGTTTCCATAACTCATCTCCAGAAGTTGAGTATGTGATGAGAGCACCTAAAAATCCTGCTGAGATTGTGACTGAGAAAGACTTGATTTCAGCTGTTGAAAATTTTCAACTTTCACTTAGAGATGCTATGAATATTGAGATTGTTGAGTATGCAAGTTTCTTGGACCAGGGGTCACTGCAGAAACAGTTGAAGGTATTTGTGGAAGTCCAAGATGAATCTAATTTTCTGGAGGACAAGCTAGAAGAATCAATTAAAGTTTTTAGAAGTTGTATGTCCACTCTCGAGAGTGGCTTGGGAGCTATATACAAGGTGCAGAGGGATAAAGGTCAACTAAGAAATTTACTGTTGTTCATAGTAAGGTCTGGAGCTTTTGATCAATTATCAGACTTAGCCATTCAGAATGGAACATCAGCTAGTCAATATAAACCACCCAAGATTATAAGGAATCATGAAGTTGTCAAACTCTTGGAAAATTTAGCCATTGTGACAGTGTCGTTTGATGGTTAA 1503 0.4125 MVLGHLNLLVIVVLIFLLSSGTSSSTTRPKLIPYFDSSLSKAASFIGHRGSIAVRQRVFPPRPEVNKILWFLYADDTTTTKCGLKVMAASTYPLQSGNATPQQLAAFSSPLEVILGSHVEHQMYCHLLCGLRNLDVIDGITTPYAIGLIKAFGLLESKWGQLCDDLDHGFPCNEISEGAMREAVTKTLGGPQPELANRIRLICEGNNWGGIVCRLWPNTRYIRCVTTGSMKQYYQKLKYYAGEVPILGGDYFASECCVGLNLDMMQPPETTRFVIFPTFAYFEFLPFNMNEDNVSKETVDLCSVEVGKMYEVVVTTYRGFYRYRLGDIVRVVGFHNSSPEVEYVMRAPKNPAEIVTEKDLISAVENFQLSLRDAMNIEIVEYASFLDQGSLQKQLKVFVEVQDESNFLEDKLEESIKVFRSCMSTLESGLGAIYKVQRDKGQLRNLLLFIVRSGAFDQLSDLAIQNGTSASQYKPPKIIRNHEVVKLLENLAIVTVSFDG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02876 500 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 15 492 IPR004993 -
Vimu6g02876 500 Pfam GH3 auxin-responsive promoter 13 482 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02876 Vimu-Chr6 25378674 25380265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02876 16 495 EF-hand Containing Proteins AT1G23160 32.860 1.11e-81 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02876 K14487 - gmx:100786829 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02876 6 25378674 25380265 Vimu6g02876 6 25378674 25380265 ECH