Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02858 ATGCATAACAACCTTACTGTAATCTCTATCAGTCCAACCTCATGCAATGCTCAATTAACAACAACTGAATTTCCTTCCTCAGATTCAACTATGGCAAGTTTTATGTCACTCTTCTCCTTGTCACCGATTCCTTTCAATCAACACAAATTCGAAGCCAAAAGTTTTTGTTTTCACAAGCCCTTGATCCAAAGTAAGCACCACCAACTTGGATCGCAAAACCTCTTTTACCCCTTTTTCCGAAACCCATCTTCGAAATTGTGTGCCACTTCGCGATTGTCCATTGAGGAGACGGAGCAACAAGTCGGAACCTTGACCCGACCGGAAGACCTGAAAGGGGCGTTGGCTTATTTGTTTAGGACGGAAACTGGTGGAGGTTTGGTGAAAGTTTATGTCACAAAGAAAAAAGATAGGTATTTTGTTTACGTTGAGATTTCTTCGTTGGATGTGAATCATTGTGGTGAAAGTGAAACATTGGTGTTGTGTTGGGGTGTGTATAGAGGTGATGCATCTTGTTTTGTGGATATGGATTCGACTGGGTTGAGTGGGATTGCGGCAAAGCGGATGAATGTTAGTCCTTTGGTGCAAACTTCTGTTGGCAAGTTTGGAGTTGAGTTGGAATTTGATGCCAAATATGTTCCTTTGTACTTGTCATTTTTCTTGATGTCATCTTTGGATGCAGGGTTGGAGATTAGAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGGTTGCTTCCGGGTTACCCGAGTCCTTTGGGGCTCTCTTATTCTCCTGATGGCTCTGTGAATTTTGCTATTTTCTCGAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAAGGGTGTGGAGAAGCCTGCTTTGGAGGTTGATTTGGATCCCTATGTGAATAGGTCAGGTGACATGTGGCATGTCTCGTTTGAGAGTGTCGAGAGTTTTGTGAGCTATGGTTTTCGCTGCAGAGGGGGTGTTCATAAGCAGAACAGAGGTGATAGTTCTGCTGAGCATGTTGTTTTGGACCCGTATGCTAAGATTGTCGCTAATTCTTGTCCTGGTGGTCTTGGACTAATGCAGAATCTTGGATGGTTGAGAAAGGAACCTGCTTTTGACTGGGGTGGTGATTTTCACCCAGATTTATCCATGGAGGAACTGGTGGTTTACAGGTTGAATGTCAAGCGCTTCACACAGCATGAGTCAAGCCAACTTCCAAGTGGTTCAGCTGGAACCTTTACTGGTTTGGCTGAGAAGGTTCAGCATTTTAAAGATCTAGGTGTGAATGCTGTTCTGATGGAGCCGGTTTTCACATTTAATGAAAAAAAAGGACCATTTTTTCCTTGCCATTTTTTCTCCCTGATGCACATTTATGGACCATCTGGTGGTCCTGAATCTACCATGGCCTCTATGAAAGAGATGGTTAAAATTATGCATGCCAATGGGATAGAAGTTCTTATGGAAGTAGTTTTCTCAAATACTGCTCAGATTGGTGCTCTACAAGGAATTGATGACTCATCCTACTATTTAGCAAATGGAGTTGGTGATTTGAAGATGCGGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATTTGATTCTGGACAGTCTGCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCGTAAATGCTTCACACCTGCTGAAGGGATTTCATGGGGAGTATTTGTCTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTGCTCTCCAAGACTAAAATCATAGCAGATTGTTGGGATCCTCATGACATGGTAGCGAAGGAAATTCACTTTCCTCATTGGATGAGATGGGCTGAAATGAATGCAAAATTTTGTAATGATGTGAGGAACTTTTTAAGGGGTGAAAGTCTTCTTAGCGACCTTGCAACAAGACTTTGTGGGAGTGGAGACATGTTTTCTGACGGACGAGGCCCAACATTCTCTTTTAATTACATAGCCAAGAATTTAGGATTTTCTCTTGTAGACTTGGTTAGCTTCAACAGTGATGATGAATTAAGTTGGAATTGTGGAGAAGAAGGAGCCACTAACAACAGCAGAGTCCTTGAAACACGACTCAAACAAATCCGTAATTTCCTCTTTGTCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGCCCACTCCTATGGTGGTTCTCTTGCATATGGTGACATAAAGCCAATCACTTGGAGTACTTTGACATCAGGCTTTGGTAAACAAATCTCACAATTCATTTTCTTTATGAGTTCACTGAGAAAGAGGAGGAGTGATCTTCTTCAGAGAAGGAGCTTCTTAAAAGAAGAAAACATAGAATGGTATGGAAGTGATGGGGCTCCACCAAGATGGGAAGATCCATCATGCAAGTTTCTGGCTATGACTTTGAAGGCTGAAGTAGCAAAATTCCCAGAGAGCTCTGTATCTTCTGATATATCTGGGGATCTATTTATTGCTTTCAATGCAGCTGATCACCCAGAAACTACAGTTTTACCCTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTTGACACAGCTCTTCCATTTCCCAGCTTTTTCTCAACCAGTGGTGAAATAGTCCCTGAGATGAGGGCAGGTCTGTTTACTTATAAAATGAAGTCTCACAGCTGCGTTTTGTTTGAGGCGTGTAATTATACCATTTAA 2688 0.4241 MHNNLTVISISPTSCNAQLTTTEFPSSDSTMASFMSLFSLSPIPFNQHKFEAKSFCFHKPLIQSKHHQLGSQNLFYPFFRNPSSKLCATSRLSIEETEQQVGTLTRPEDLKGALAYLFRTETGGGLVKVYVTKKKDRYFVYVEISSLDVNHCGESETLVLCWGVYRGDASCFVDMDSTGLSGIAAKRMNVSPLVQTSVGKFGVELEFDAKYVPLYLSFFLMSSLDAGLEIRSHRRTNFCVPVGLLPGYPSPLGLSYSPDGSVNFAIFSRHAESVVLCLYDEKGVEKPALEVDLDPYVNRSGDMWHVSFESVESFVSYGFRCRGGVHKQNRGDSSAEHVVLDPYAKIVANSCPGGLGLMQNLGWLRKEPAFDWGGDFHPDLSMEELVVYRLNVKRFTQHESSQLPSGSAGTFTGLAEKVQHFKDLGVNAVLMEPVFTFNEKKGPFFPCHFFSLMHIYGPSGGPESTMASMKEMVKIMHANGIEVLMEVVFSNTAQIGALQGIDDSSYYLANGVGDLKMRSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFVNASHLLKGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHDMVAKEIHFPHWMRWAEMNAKFCNDVRNFLRGESLLSDLATRLCGSGDMFSDGRGPTFSFNYIAKNLGFSLVDLVSFNSDDELSWNCGEEGATNNSRVLETRLKQIRNFLFVLFVSLGVPVLNMGDECAHSYGGSLAYGDIKPITWSTLTSGFGKQISQFIFFMSSLRKRRSDLLQRRSFLKEENIEWYGSDGAPPRWEDPSCKFLAMTLKAEVAKFPESSVSSDISGDLFIAFNAADHPETTVLPLPPEGMSWYRLVDTALPFPSFFSTSGEIVPEMRAGLFTYKMKSHSCVLFEACNYTI 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02858 895 Gene3D Glycosidases 366 776 - -
Vimu6g02858 895 PANTHER GLYCOGEN DEBRANCHING ENZYME 211 889 - -
Vimu6g02858 895 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 251 344 IPR004193 GO:0004553|GO:0005975
Vimu6g02858 895 Pfam Alpha amylase, catalytic domain 409 493 IPR006047 GO:0005975
Vimu6g02858 895 Coils Coil 757 777 - -
Vimu6g02858 895 Gene3D Immunoglobulins 237 354 IPR013783 -
Vimu6g02858 895 SMART aamy 389 763 IPR006047 GO:0005975
Vimu6g02858 895 CDD AmyAc_plant_IsoA 381 769 IPR044096 GO:0019156|GO:0019252
Vimu6g02858 895 SUPERFAMILY Glycosyl hydrolase domain 776 890 - -
Vimu6g02858 895 SUPERFAMILY E set domains 246 378 IPR014756 -
Vimu6g02858 895 Gene3D - 777 894 IPR013780 -
Vimu6g02858 895 SUPERFAMILY (Trans)glycosidases 368 767 IPR017853 -
Vimu6g02858 895 CDD E_set_GDE_Isoamylase_N 250 389 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02858 Vimu-Chr6 25261763 25264900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02858 84 894 Glycoside Hydrolase AT1G03310 56.622 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02858 K01214 - gmx:100777953 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02858 6 25261763 25264900 Vimu6g02858 6 25261763 25264900 ECH