Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02823 ATGAGTGTTCAGCTATCAGCTTTATGGGTCCCCAACTCTCCGTCAATTCCCACAAACTTCCTTCCCAACCGTCGAAGATTCTCCGTATCGGCTCTCTCATCCCAATCCCCCACTATTCAGGCATCCCTTTTCCCCTTTTCACTCGGCTTTCTATCTTTTTCCGATACACTTTCACCTCCTGATATTGCATCTCGCGCGCTTTGTTATTTGTTATGTGTTGCTATTTCAAAAATTCAAGCTTTCATTTTTTTTTTCGTAATATATTCAGTTTTCTTGATGCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGATAATGGATATGGAAATCCCAACGGCAACTTATTTGATGGGTTTCAAGGAGATAGTGATCATTGGAGTGACCTGGACACTGACCTTTATCACTGGACAAAGACATTGCGCCCTGTGCAGTGCAAAATTCCGAGTGCTGATAGTCTTGTGGGGCATGGGGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCTAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCCATGTCCACAAGTCATCCACAGGCAAAAAGAGAATTTTGGTCTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGACTATTTTACTAGGAATGGAACAAAGGTTGTCTTCTCCAATGGGAAGCTTGGAATGGGAACAATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATATTAAGCGTAGAGCCAAAGGGCTACTTCCTCGTGCGATTCGAGCTAGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAACAGCTCCCAGGCCAGGAGTTACAAGAGAGTTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGATTCTCCTGGGATACTCCCAATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTCGCCATATGTGATGATATCGGAGAGAGGTCTTATGATGTGACTGATGTTGCTGCAATTCTTGTGCAGATGCTCACAAAGCTTCCCACAGTAGGAGGAGATACTCTTCGAAAACGGTATAAAATTGATGTAGATAGTAAAAATGGTAAAATATTCATAGAGAAGCTTGCAGTTCGAATATTTAATGGAGATGTTCATCAAGCAGCACTCCGTGTCCTAGCAGATTTTAGAAAAGAAGACAACTCCAGATGGATTAAGATGAATGTGGATATTGTGGTTATGAATGACATTGTGGAAGAGAAAGGTGAATGTTCCCACAAGACTGCATTTGAAGCCTTGAGGCACAAGAAAGAAAGGATTTAA 1371 0.4296 MSVQLSALWVPNSPSIPTNFLPNRRRFSVSALSSQSPTIQASLFPFSLGFLSFSDTLSPPDIASRALCYLLCVAISKIQAFIFFFVIYSVFLMQIIGVGGPSWRDNGYGNPNGNLFDGFQGDSDHWSDLDTDLYHWTKTLRPVQCKIPSADSLVGHGAVVSWSYCKSRKRTEGAALVDGCCDRGAGWTNSHVHKSSTGKKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGKLGMGTMKLGRLAKELAADVNIKRRAKGLLPRAIRARIVGYPNVGKSSLINRLLKRRMCPTAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVTDVAAILVQMLTKLPTVGGDTLRKRYKIDVDSKNGKIFIEKLAVRIFNGDVHQAALRVLADFRKEDNSRWIKMNVDIVVMNDIVEEKGECSHKTAFEALRHKKERI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02823 456 Pfam 50S ribosome-binding GTPase 272 340 IPR006073 GO:0005525
Vimu6g02823 456 Gene3D - 176 325 IPR027417 -
Vimu6g02823 456 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 189 420 - -
Vimu6g02823 456 CDD YlqF 199 324 - -
Vimu6g02823 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 386 IPR027417 -
Vimu6g02823 456 PRINTS GTP1/OBG GTP-binding protein family signature 271 291 IPR006073 GO:0005525
Vimu6g02823 456 PRINTS GTP1/OBG GTP-binding protein family signature 317 332 IPR006073 GO:0005525
Vimu6g02823 456 Gene3D - 329 415 IPR023179 -
Vimu6g02823 456 FunFam Mitochondrial GTPase 1 329 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02823 Vimu-Chr6 24907671 24911581 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02823 K19828 - gmx:100784201 496.123