Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02816 ATGGCTTCTCATTTCTCCTTCACTCTCAGTCACACCATTCCTTCGTCACGTGCCAGACCTGCAGCTAAATCCTTTCACTCTCTTACCTTGTACCTTCGATCATCGTATGATGTTTTCAAGGGTATTCGTCCTCCCCTCCTATTCACAGAAAGCAAACATATTTGTGGATTTCAACCATTACGCTCTCGGACTCTAGAAATTGTTACTGAAGTGTCTCGGGATAATATCTCGAAGGATGATAATGTCGACTTGGAAGGTCCTAACCAGGAGATACAGAAGAAAATAAAAATGGTAAAATTAATATTGGATTCGAAGGAAGATGGAGAAATAACAATATCAGCATATGACACGGCATGGGTTGGTCTGGTGAAAAATGTTGGGGACACGAATTCTCCTCAGTTCCCTTCCTGTCTTGAATGGATTGCGAATAATCAGCTGCATGATGGTTCCTGGGGAGATGCTGAATTATTCATTGCACATGATCGTATTCTTAACACGTTAGCTTGTGTGGTAGCATTAACATCATGGAACATGCACCCTCAAAAGTGTGAGAAGGGAATGCAGTTTTTTAAGGAGAATTTGTACAAGCTTCAGGATGAAAATCCAGAACACATGCCGATCGGGTTTGAAGTTACTTTCCCTTCTCTTCTCAATTTAGCTAGAAGTTTGGATGTTGAAGTGCCAGATGACTCTCCTATCTTGAAAAACATCCTTGCAATGAGAGACCTGAAGCTTAAAAAAATACCAAGAGAGATTCTGCACAAAGTGCCAACAACACTGCTCCATAGTTTGGAGGGAATGCAAAATTTGGACTGGAAACAGCTACTGAAGTTGCAGTGCCAAGATGGGTCATTCTTATTCTCTCCATCCTCCACAGCTTATGCTCTCATACAAACTAAGAATGAAAGTGCTCACAAATACCTGGATAAAACACTCCAGAAGTTCAATGGGGGAGTTCCTAATGTGTACCCGGTGGATTTGTTTGAACACACATGGATCTTCGACAGACTTGATCGTCTTGGAATTTCAAGATATTTTCAGTCAGAAATCAAAGATTGTGTGACGTATGTTTCAAGATACTGGACTGAGAAGGGTATTTGCTGGGCAAGGAATTCAAATGTTCAAGATATAGATGACACAGCAATGGGATTCAGACTTCTAAGGTTACATGGCCACCAAGTTTCAGCCAACGTGTTTGAGCACTTCAAGAAAAATGGCGAATTCTTCTGTTTTTCTGGACAGTCAAACCAAGCTGTGACAGGGATGTTCAATCTCTATCGAGCATCTCAAGTGCTATTTCAAGGAGAGGAGATTCTTGAGGATGCCAAGAACTTCTCAACCAAATTTTTAACTGAGAAACGTGAAGCAAATCAGCTCCTAGATAAATGGATCATAACCAAAGATTTACCTGGCGAGGTGAGTTATGCTCTGGAGGTGCCCTGGTATGCTAGTTTGCCAAGAGTGGAGACAAGATTTTACCTTGAACAATATGGTGGTAGCAGTGACGTTTGGATTGGCAAGACCCTTTATAGGATGCCCTTCGTGAACAATGATGTTTATCTCGAGCTTGCAAAATTGGACTACAACATCTGTCAAGCAGTGCATTGTGCAGAATGGGAGAAAATCCAAAGGTGGTACTCGGACGCAGGGCTAGAGAGATTTGGATTGAGCAAACAAAGTCTACTATTTGCTTACTTTATTGCAGCAGCCAGCATATTTGAACCTGAGAGGTCTCTAGAGAGACTTACATGGGCTAAAACTGCAGCATTGCTCCAGACACTCGGGTCCTTCATAAAGGATGAACAAACTAGGAATGCTTTTGTAGATTTGAAGTTGAACAAGAAGAAGAAGAAAGAGGAAGAACTCCTGGAGATTTTGCTGACAAACCTTGATTACCTTGGGTTCGAAATGCTTCGTAGTCATGGTCGTGAACTATCACATTATTTGAATCAAGCAGGTTGGCTATCAGGTTGGCAGAATGAAGGGAAGAACTTGGAAAGAGAAGCTGAGCTGATTGTGCAAATCATAAATGTAATGGCTGGCTACTGGTCAGAAGAACTACTGCTCAATCCACAGTACCAGAGGTTGCTCCAAACCAGTAATAGAGTCTGCCATGGCCTCCGTAATTATCAAATCAGCAAGGTACATGATAGTGGCAGCGACAAGAGGATAACATGCATGACTACCCCTCAAATAGAATCAGACATGCGAGAACTTGTGCAATTGGTGCTCCAAAATTCTTCAGATGGTGTGCACACCAATGTGAAGAATTCATTCCTCACAGTGGCCAAGGGCTTCTACTACGGAGCATATTGTGACCCAGAGACCATAAACTCTCACATTCAGAAAGTCCTCTTTGAAAAAGTGATGTAA 2373 0.4201 MASHFSFTLSHTIPSSRARPAAKSFHSLTLYLRSSYDVFKGIRPPLLFTESKHICGFQPLRSRTLEIVTEVSRDNISKDDNVDLEGPNQEIQKKIKMVKLILDSKEDGEITISAYDTAWVGLVKNVGDTNSPQFPSCLEWIANNQLHDGSWGDAELFIAHDRILNTLACVVALTSWNMHPQKCEKGMQFFKENLYKLQDENPEHMPIGFEVTFPSLLNLARSLDVEVPDDSPILKNILAMRDLKLKKIPREILHKVPTTLLHSLEGMQNLDWKQLLKLQCQDGSFLFSPSSTAYALIQTKNESAHKYLDKTLQKFNGGVPNVYPVDLFEHTWIFDRLDRLGISRYFQSEIKDCVTYVSRYWTEKGICWARNSNVQDIDDTAMGFRLLRLHGHQVSANVFEHFKKNGEFFCFSGQSNQAVTGMFNLYRASQVLFQGEEILEDAKNFSTKFLTEKREANQLLDKWIITKDLPGEVSYALEVPWYASLPRVETRFYLEQYGGSSDVWIGKTLYRMPFVNNDVYLELAKLDYNICQAVHCAEWEKIQRWYSDAGLERFGLSKQSLLFAYFIAAASIFEPERSLERLTWAKTAALLQTLGSFIKDEQTRNAFVDLKLNKKKKKEEELLEILLTNLDYLGFEMLRSHGRELSHYLNQAGWLSGWQNEGKNLEREAELIVQIINVMAGYWSEELLLNPQYQRLLQTSNRVCHGLRNYQISKVHDSGSDKRITCMTTPQIESDMRELVQLVLQNSSDGVHTNVKNSFLTVAKGFYYGAYCDPETINSHIQKVLFEKVM 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02816 790 Pfam Terpene synthase family, metal binding domain 521 597 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vimu6g02816 790 Gene3D - 98 529 IPR036965 GO:0010333|GO:0016829
Vimu6g02816 790 FunFam Ent-copalyl diphosphate synthase 114 326 - -
Vimu6g02816 790 Pfam Terpene synthase, N-terminal domain 271 477 IPR001906 GO:0010333|GO:0016829
Vimu6g02816 790 FunFam Ent-copalyl diphosphate synthase, chloroplastic 304 528 - -
Vimu6g02816 790 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 282 501 IPR008930 -
Vimu6g02816 790 SFLD Terpene Cyclase Like 1 N-term 88 511 - -
Vimu6g02816 790 Gene3D - 114 326 - -
Vimu6g02816 790 SUPERFAMILY Terpenoid synthases 516 764 IPR008949 -
Vimu6g02816 790 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 88 511 - -
Vimu6g02816 790 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 126 297 IPR008930 -
Vimu6g02816 790 Gene3D Farnesyl Diphosphate Synthase 531 790 IPR008949 -
Vimu6g02816 790 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 88 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02816 Vimu-Chr6 24792388 24798664 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02816 K04120 - gmx:100807519 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02816 6 24792388 24798664 Vimu6g02816 6 24792388 24798664 ECH