Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02812 ATGGCTTCTCCCTTCTCCACCCACCCTCACCTTCCTTCTTTCTCTTCTTCTAACCATTTCCCTCTTCCATCTCCATCACTATCATCTTCTTCTTTTTCTTTTATTTCTCTTCACCACTTCTCCAAATCCTCTCTTGGTTCTGTGTTTTCTGATACTACCGACAAACAAGAGATAAGATGCAGAGCTATATCCAAGTCACGAACGCATGAATATTCAGACATATTTCAGGGTGGTCTTGCAGTGTTGAAGTTGCCCGAGATTAATGTGGAGGATGACATAGAAGAGGAGCAAGACACTGAGGTTTCGGTGGCAAAAGAGATCAAGAAGAGAGTGGACACTGTCAAATCAATATTGAGTTCATTGGAAGATGGAGAGATAACTGTGTCTGCTTATGACACTGCTTGGGTTGCTCTGGTAAAAGATGTTAATGGTAGCGGTAACCCTCAGTTTCCAACGAGTCTAGAATGGATAGCAAAAAACCAACTTGAGGATGGATCATGGGGTGATCAGGAATTGTTTTCAGCCCATGATCGGATCATAAACACGTTAGGTTGTGTAATTGCATTAAAATCGTGGAACATGCATCCTGAAAAGTGTGAGAAAGGAATGACATTTTTTAAGGAGAATCTTAACAAGCTTGAGAATGAGAATGCGGAGCATATGCCAATTGGGTTTGAAGTAGCTTTCCCATCACTTCTTGACCTGGCTCGTGAGTTGGAGATCGATGTGCCTGAAAATTCCCCTATCCTGAACAAAATCTTTGCAATGAGAAACGTAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCCACAAGTCTGCTTCATAGCTTGGAAGGGATGTCAGACCTGGACTGGAATTCACTTCTCAAACTTCAGTCTCAAGACGGGTCTTTCTTGTTTTCTCCTTCCTCCACAGCTTTTGCTCTCATGCAAACCAAAGATCAAAATTGCCATGACTACTTGAATCAAATAGTCCAGAGGTTTAATGGTGGAGTTCCAAACGTGTATCCAGTGGATTTGTTTGAACATATTTGGGTGGTTGATAGGCTAGAACGCCTAGGAATATCTCGGTTTTTTCAGCAAGAGATCAAAGACTGTATGAGCTATGTTAATAGATATTGGACCGAGAAAGGTATCTGTTGGGCAAGAAATTCTAGTGTTGAAGACATCGATGACACTGCAATGGGTTTCAGATTACTGAGATTACATGGTCACCAAGTTTCAGCTGATGTGTTCAAGCACTTTGAGAAGAATGGTGAATTTTTCTGTTTTAAGGGACAAAGTACACAAGCTGTGACAGGAATGTTCAATCTGTTAAGGGCGACTCAAGTAATGTTTCCCGGAGAGAAGATTCTAGAAGATGGGAAGAAATTCTCCTCAAAATTTTTGACGGAGAAGAGAGAAGCAAATGAGCTAGTAGATAAATGGATCATAATGAAAAACTTAGCAGAAGAGGTGGCATACGCATTGGACGTGCCATGGTATGCAAGTATGCCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGCGGTGAGAGTGACGTATGGATTGGCAAGACCCTTTATAGGATGCCCTATGTGAACAACAACAACTATCTGGAGCTTGCTAAATTAGATTACAACAATTGTCAAGCAATGCATCTAATGGAGTGGGGGAAGATTCAGAAGTGGTACTCAGAATCTAGATTGGCAGAGTTTGGAATGAACAGAAGAAATCTTCTGTTGGCTTATTTTCTGGCAGCTGCGAGCATATTTGAACCAGAAAAATCTCATGTGAGGCTTGCTTGGGCTAAAACCACAGTCTTACTTGAGACCATAACATCCTATGTTAGTGATGAAGAGATGAGAAAAACTTTCATGAAAAATTTCAGTGACACCATTAGCAGGCGTGAGTACTCCATTGGCTGGAGGTTGAACAGGAACAGAACAGGACATGGACTTGTGGAAACTTTGGTTACGACCATAGATCAAATATCATGGGATATACTTGTTTCTCAAGGTCATGAGATCGGATATGATATGCATCGCATGTGGGAAAAGTGGCTTTCAAGTTGGCACGAGGAAGGAGACAAATGTGAAGGACAGGGAGAGCTTTTGGCGCAGATAATAAACCTATGTGGCGGGCATTGGATTTCAGAGGATCAAATGTTCGATCCTCAATATGAGACTCTTCTTCAACTCACTAACTCACTCTGCCATACACTCTATTGTCATCAAAAGGACAAGGAATCGGAGAGCATGATATTCCCAGAAGTTGAGTCGCAAATGCAAGAACTGGTGCAATTGGTGTTCCAAAAATCTACATCTGGCATTGATTTCAATATCAAGAACACTTTTCTCACTGTGGTCAAGACTTATTACTATGCAGCTTTCTGTGATTCAAGGACCATCAACTTCCACATTGCCAAAGTTCTGTTTGATAAAGTTATTTAA 2445 0.4123 MASPFSTHPHLPSFSSSNHFPLPSPSLSSSSFSFISLHHFSKSSLGSVFSDTTDKQEIRCRAISKSRTHEYSDIFQGGLAVLKLPEINVEDDIEEEQDTEVSVAKEIKKRVDTVKSILSSLEDGEITVSAYDTAWVALVKDVNGSGNPQFPTSLEWIAKNQLEDGSWGDQELFSAHDRIINTLGCVIALKSWNMHPEKCEKGMTFFKENLNKLENENAEHMPIGFEVAFPSLLDLARELEIDVPENSPILNKIFAMRNVKLTRIPREMMHKVPTSLLHSLEGMSDLDWNSLLKLQSQDGSFLFSPSSTAFALMQTKDQNCHDYLNQIVQRFNGGVPNVYPVDLFEHIWVVDRLERLGISRFFQQEIKDCMSYVNRYWTEKGICWARNSSVEDIDDTAMGFRLLRLHGHQVSADVFKHFEKNGEFFCFKGQSTQAVTGMFNLLRATQVMFPGEKILEDGKKFSSKFLTEKREANELVDKWIIMKNLAEEVAYALDVPWYASMPRVETRFYIDQYGGESDVWIGKTLYRMPYVNNNNYLELAKLDYNNCQAMHLMEWGKIQKWYSESRLAEFGMNRRNLLLAYFLAAASIFEPEKSHVRLAWAKTTVLLETITSYVSDEEMRKTFMKNFSDTISRREYSIGWRLNRNRTGHGLVETLVTTIDQISWDILVSQGHEIGYDMHRMWEKWLSSWHEEGDKCEGQGELLAQIINLCGGHWISEDQMFDPQYETLLQLTNSLCHTLYCHQKDKESESMIFPEVESQMQELVQLVFQKSTSGIDFNIKNTFLTVVKTYYYAAFCDSRTINFHIAKVLFDKVI 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02812 814 Pfam Terpene synthase family, metal binding domain 537 696 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vimu6g02812 814 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 130 313 IPR008930 -
Vimu6g02812 814 Gene3D - 113 545 IPR036965 GO:0010333|GO:0016829
Vimu6g02812 814 Gene3D - 130 342 - -
Vimu6g02812 814 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 104 811 - -
Vimu6g02812 814 SUPERFAMILY Terpenoid synthases 532 795 IPR008949 -
Vimu6g02812 814 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 298 518 IPR008930 -
Vimu6g02812 814 FunFam Ent-copalyl diphosphate synthase, chloroplastic 547 814 - -
Vimu6g02812 814 SFLD Terpene Cyclase Like 1 N-term 100 527 - -
Vimu6g02812 814 FunFam Ent-copalyl diphosphate synthase, chloroplastic 320 544 - -
Vimu6g02812 814 FunFam Ent-copalyl diphosphate synthase 130 342 - -
Vimu6g02812 814 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 100 527 - -
Vimu6g02812 814 Pfam Terpene synthase, N-terminal domain 287 493 IPR001906 GO:0010333|GO:0016829
Vimu6g02812 814 Gene3D Farnesyl Diphosphate Synthase 547 814 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02812 Vimu-Chr6 24736099 24744000 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02812 K04120 - gmx:100784193 1370.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02812 6 24736099 24744000 Vimu6g02812 6 24736099 24744000 ECH