Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02797 ATGGATTCGGAAACCAAGAAGGACATAGAAGTCGCTCCGGCACTCATCGCCGTTCACCCCGACCAATGCTCCGTCGCCGTCGCCGTCGGTCATCACCTTCGCGTCTTCGACCTCCTTGCCGGTTCCGCAGTTTCCTTAACGGATGACTCCGATGCCTCCCCCTTCCACACCGATAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTCTCCGCCGGTGACGATAAAACTGTAAAGGTCTGGTCAACACAGTCATGGCGTTGCCTCACCAGCGTGTCCTCCGAGAAGAGAGTGTCCGCAGTTGCAATTAGCGACGACGGAACCTACGTTTGCTTCGCCGACAAATTCGGCCTTGTTTGGATTGTGGATCTCGATCCTCCGTTACGCGATAAGAAACCGGCACCTCTTCTTTCTCACTACTGCAGTATCATCACTAGCTTGGAATTTTCCCCTCATGGTCGCTTCATTTTAAGTGCTGATCGTGATTTCAAAATTCGTGTTACTTGTTTTCCCAAGAATCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCGTTCGTTCAGGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATGCCACAGTTCGGTTGTGGAATGTCGACTCTGGAGCACTTCTAGATACTTGTGAGGTAGCAACTAAGGCAGGACTTTTAGAGTCTGATGACAAAGCAGAGGAGCATGAACATGCTGTTACTGATTTATGCACTGTCCTTGATGGTTTGCTTGTTGCGGTGGCCATTCAGAGGCAAGATTATCACTATAGCATTCTCTCATTTCTCACTGGGAGAATTTTGTTTGGTTTTCTGACAAGTTTATTTGATAACGCTGTAGTAGTTTCAATTGCTGGAGAGGCCTTTGTCCCTACATGCTTGGCGAGCCCCTCTGCAGGGAAATTGTGGATGGTTACTGGTGTCTCTACTTTACCTGGTTGCAATTTTCCCGCGTTGGCTCGTGTAAAAGTAATTTCTGGTATAGATGATGAACAAGAACCAGTTGTTATGGGAGACAATGGCATACCTGGGGGAGAAAAGCTGCTAGAAACGTTGCAAGGAACAGCATCCGTTGATGACAATGCTTTTTTAGCAGCAGCTGAAGCTGTCAAAACAGCAATGGGTCAGCTGTTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATCTAGGAAGAAATGCAGAAATGATAGAAAACTCAAGGGTTAG 1275 0.4737 MDSETKKDIEVAPALIAVHPDQCSVAVAVGHHLRVFDLLAGSAVSLTDDSDASPFHTDNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCLTSVSSEKRVSAVAISDDGTYVCFADKFGLVWIVDLDPPLRDKKPAPLLSHYCSIITSLEFSPHGRFILSADRDFKIRVTCFPKNPLNGAHQIQSFCLGHTEFVSCLAFVQAQECPQGLLLSGSGDATVRLWNVDSGALLDTCEVATKAGLLESDDKAEEHEHAVTDLCTVLDGLLVAVAIQRQDYHYSILSFLTGRILFGFLTSLFDNAVVVSIAGEAFVPTCLASPSAGKLWMVTGVSTLPGCNFPALARVKVISGIDDEQEPVVMGDNGIPGGEKLLETLQGTASVDDNAFLAAAEAVKTAMGQLLIKKQYPSENRESRKKCRNDRKLKG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02797 424 Gene3D - 14 97 IPR015943 GO:0005515
Vimu6g02797 424 Gene3D - 98 331 IPR015943 GO:0005515
Vimu6g02797 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Vimu6g02797 424 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 12 98 - -
Vimu6g02797 424 PANTHER WD40 REPEAT PROTEIN 4 12 415 IPR028884 GO:0036265
Vimu6g02797 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
Vimu6g02797 424 SUPERFAMILY WD40 repeat-like 16 287 IPR036322 GO:0005515
Vimu6g02797 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Vimu6g02797 424 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 358 - -
Vimu6g02797 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Vimu6g02797 424 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Vimu6g02797 424 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 416 IPR028884 GO:0036265
Vimu6g02797 424 SMART WD40_4 47 85 IPR001680 GO:0005515
Vimu6g02797 424 SMART WD40_4 133 172 IPR001680 GO:0005515
Vimu6g02797 424 SMART WD40_4 180 224 IPR001680 GO:0005515
Vimu6g02797 424 SMART WD40_4 88 126 IPR001680 GO:0005515
Vimu6g02797 424 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Vimu6g02797 424 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Vimu6g02797 424 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02797 K15443 - gmx:100786310 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02797 6 24565863 24568530 Vimu6g02797 6 24565863 24568530 ECH