Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02796 ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGGGTTCCTTTCTACCTTCACCCGGTGTTAGAGCTTGTCTCTCGATCTTGGCAAGCAGCTATTCGAAGCTCTGAACTATTTAGAGCGCGGCAGGAGGTTGGTTCAACTGAGGATCTGTTATGTGTCTGTGCTTATGATCCAGAGAACTTATGGCAGCTGTATGACCCTTTGCGAGATCTCTGGATCAGACTTCCTGTTCTTCCATCAAAGATCAGGCACCTTTCCCACTTTGGTGTAGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCGTTGACTGGGGACCAAGATGGTTGTTTCGCAACGGATGAAGTCTGGTCATATGACCCTGTAGTTCGACAGTGGGCCCCTCGTGCACCAATGCTTGTCCCACGTTCTATGTTTGCATGTTGTGTTTTGGACGGGAAAATTGTTGTAGCCGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAAGCAGAAATGTATGATCCTGAGAAGGATGTCTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCGGCCTGTTCAGGGGTAGTGATTGGTGGAAAAGTGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCCGGGTGGATTGTTGAGGAATGTGCATGGCTTCAGGGTCCGATGGCAGTCGTCCGTGATGCGCTCTATGTGATGAGCCATGGATTGATCCTCAAACAGGACAAAGAAGTGAGGAAAGTTGTGGGTTCGGCATCTGAGTTTCGAAAGAGAATTGGATTTGCAATGGCTGGACTAGGTGATGAGTTATACGTGATTGGAGGCGTCATTGGCCCTGATAGATGGAATTGGGAGATTAGGCCATTATCCGAAGTTGATGTTCTCACACTTGGAAATGAGAGACCAACTTGGCGCCAAGCAGCTCCAATGACTTGGTGTCATGGTACTATTCTTGGTTGTACACTGCTGAGAATTTAG 1038 0.475 MSGLIEGLPDAVAIRCLARVPFYLHPVLELVSRSWQAAIRSSELFRARQEVGSTEDLLCVCAYDPENLWQLYDPLRDLWIRLPVLPSKIRHLSHFGVVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRAPMLVPRSMFACCVLDGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWIVEECAWLQGPMAVVRDALYVMSHGLILKQDKEVRKVVGSASEFRKRIGFAMAGLGDELYVIGGVIGPDRWNWEIRPLSEVDVLTLGNERPTWRQAAPMTWCHGTILGCTLLRI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02796 345 Gene3D - 54 338 IPR015915 GO:0005515
Vimu6g02796 345 SMART kelc_smart 161 208 IPR006652 GO:0005515
Vimu6g02796 345 SMART kelc_smart 103 160 IPR006652 GO:0005515
Vimu6g02796 345 PANTHER OS02G0202900 PROTEIN 3 267 IPR045887 -
Vimu6g02796 345 SUPERFAMILY Kelch motif 61 331 IPR015915 GO:0005515
Vimu6g02796 345 CDD F-box_AtAFR-like 4 48 - -
Vimu6g02796 345 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Vimu6g02796 345 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Vimu6g02796 345 Pfam Kelch motif 278 330 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02796 Vimu-Chr6 24556744 24561197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02796 8 188 Miscellaneous Gene Families AT4G33900 30.000 1.27e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02796 - - gmx:100800954 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02796 6 24556744 24561197 Vimu6g02796 6 24556744 24561197 ECH