Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02793 ATGGTTGAAGAAGAGAAATATCAGAAAATTCAATTGGCGGCAGCGTCATCTCCGGCCGAAGCAGAAGCACCCAGTAGAAGTAGAATTCCACAGATCAGACCAGTGTTGACTCCACTTCCTTCGCCATCTCGTTCATCTTTTCTCTCATCACCACCTTATGCTTTTCTCGTAGGAATCATAGATGTATTTCCACTGACAACGTTGTCAAGTAACGAAAATGCTGCTTCTTCAAACTGTCGTCTCGACGCTTTTCACCTGCTTCTTCAAAGTGAAATGGACCGAATCGAAGCCGGGTACGGTGGTTTCATGGTTGGTTTGCGTGTGTTGATGGGCAGAGCAGAGCTGAGCAGTGAACAAACCGTGTGGTTGCTGTTGAAGATGCTTGGAGTGAGAAAGCTCAAATCAGGGCCTGATATCCCTTTTGTTTTAAGTGTCATGGTTGCTAATTGCGATTATAGAACCGCCCAAGTTTCCAGTGGCAAAAGTGTCAGGTATATTGTTAAGTCGGCTGTCTCTTGTTTAGTTAAATCAAGTTCATCAGCATTTCTTCTGGGATCAGAGAATAAATTTTCTCCTCAAGGACTATATTTCTCTAGTGTGGCTGAAAGAATCCTGGTCCATGCTCAAGACCCTGCCAAAGTTAGTTTGGAGATACAAAATGCTATCGATTTGAATCAATTAGATTATTCGTGGAAATTATTGGAGCAGTATATGCACATGGAGGGGTTTCCCAGAAAATCAGTCATCAGTAAGCTTGTAACAAGCTATGTGGACAGCCTTGATACGAAATTGCTAGGAAAGGCTTATGAGTTGGTAGAACGTGCTATTGAGAAAGGTAGACAAGATTTGTTGGAAAAGGATGTGCTTATCTACCTCAGCTTTGGCCTTGCAAAAGCCGGACTACCAGTTCCAGCATCAACCATTTTAAGAAAGATGATAGATATGGAGCATTTTCCCTCAGTCACTGCTTGGTCTGCAGTTTTAGCCCACATGTCACAAACAGCAGAAGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTATTCCAGAACAATAGAATAGATCCGCGTAAGAAGAGCAATGCACCTTTGATAGCCATGAAGCCAAACAGTGCTGCTTTTAGCATTGCTTTGGCAGGGTGCCTCCTATTTGAGTCATCTAGGAAGGCAGAACAGCTTCTGGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCACGTGTATACGAGAGAAATGGGCGAAGGGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCCCCAAATCTAACTGATTTACAGTTTCGACATTTCTATAATTGTTTATTGACATGCCATTTGAGATTTGGGGATCTAGATTCCGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGATGAATGCCGATGGAATTGACCATAACCGTTCTCCGGAATTGGCTTCTGTCCATAGTTTGAACAAGATTAAAGATTTAGATAGTTTACAAAATAACAGGTCAAATTCAAGTGCTGTATTATCTTATGAGGAATTCTCTAAAGATAGGAACTTCTCAAAGCTTGAGGCAGAGTCCAAAGCTATACTTGATTCTTTATTATCAAAGTTGCAGATGCGGGTGGACTTGATCACAACCAAGCATGGTATATTGCAGCCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTATGCTAGAAGCTGGCAAGACCAAAGATTTAGCTGTATTTCTTCTCAAGGCAGAGAGAGAAGATTCTCCATTTTCCAATGACAATTCAGCTTTGGTTCATGTTATTAACGCGTGCATCTCACTTGGATGGCTGGACCAAGCACATGATCTCCTGGATGAAATGCGTCTAGCCGGAGTTAGAACTGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCAGAGCGAATAGGGTGGCAGATGTCACATCGCTTCTGAGAGATGCTAAGATAGCTGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGAGTTCTCCGGCAAGACACACAGGGTGCAATCCAACTTTTTAAAGAGAGGAAAGAGGCTAGAATTCCAAGAGTCACTCAACAAAACTCTGGCATGATGGCTAAAGATGGAGCGGATACTGAAGAAGCTGGGCTAATGACCAAGCTGTTACAGGAAATCAAGGAAGGGCAGAAAGTGGACTGTGGAGTGCATGACTGGAATAATGTAATCCACTTTTTTTGCAAGAAGAGACTGATGCAAGATGCAGAAAAGGCTCTAAAGAAAATGAGAAGCTTAGGCCACTTACCAAATGCTCAAACTTTCCATTCTATGGTCACAGGGTATGCTGCCACTGGAGGAAAATATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAAGGTCTTGCTTCTTCTGTCTCGATGACGTTTGATCACGAACTTCTTGATTCTGTGCTGTATACGTTTGTAAGGGGTGGATTCTTCGTTCGAGCCAATGAAGTTGTGACCATGATGGAAAAAGGAAACATGTTTATTGACAAATACAAGTACCGAATGCTGTTCTTGAAATACCATAAATCACTTTACAAAGGGAAGGCTCCAAAGTTTCAGACAGAATCCCAACTAAGCAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGACTTGA 2733 0.4211 MVEEEKYQKIQLAAASSPAEAEAPSRSRIPQIRPVLTPLPSPSRSSFLSSPPYAFLVGIIDVFPLTTLSSNENAASSNCRLDAFHLLLQSEMDRIEAGYGGFMVGLRVLMGRAELSSEQTVWLLLKMLGVRKLKSGPDIPFVLSVMVANCDYRTAQVSSGKSVRYIVKSAVSCLVKSSSSAFLLGSENKFSPQGLYFSSVAERILVHAQDPAKVSLEIQNAIDLNQLDYSWKLLEQYMHMEGFPRKSVISKLVTSYVDSLDTKLLGKAYELVERAIEKGRQDLLEKDVLIYLSFGLAKAGLPVPASTILRKMIDMEHFPSVTAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRIDPRKKSNAPLIAMKPNSAAFSIALAGCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVYERNGRREELKKLQRHIEEAPNLTDLQFRHFYNCLLTCHLRFGDLDSASNMVLEMLRKAKEARNSLAAAKFMMNADGIDHNRSPELASVHSLNKIKDLDSLQNNRSNSSAVLSYEEFSKDRNFSKLEAESKAILDSLLSKLQMRVDLITTKHGILQPTETIYVKLVKAMLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRVADVTSLLRDAKIAGIQLDSSSYEAMIQSRVLRQDTQGAIQLFKERKEARIPRVTQQNSGMMAKDGADTEEAGLMTKLLQEIKEGQKVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHLPNAQTFHSMVTGYAATGGKYQEVTELWGEMKGLASSVSMTFDHELLDSVLYTFVRGGFFVRANEVVTMMEKGNMFIDKYKYRMLFLKYHKSLYKGKAPKFQTESQLSKREAALAFKRWIGLT 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02793 910 NCBIfam pentatricopeptide repeat 759 791 IPR002885 -
Vimu6g02793 910 NCBIfam pentatricopeptide repeat 651 683 IPR002885 -
Vimu6g02793 910 Gene3D Tetratricopeptide repeat domain 360 511 IPR011990 GO:0005515
Vimu6g02793 910 Gene3D Tetratricopeptide repeat domain 727 906 IPR011990 GO:0005515
Vimu6g02793 910 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 755 789 IPR002885 -
Vimu6g02793 910 PANTHER BNAC05G43320D PROTEIN 149 909 - -
Vimu6g02793 910 Pfam PPR repeat 450 476 IPR002885 -
Vimu6g02793 910 Pfam PPR repeat 620 645 IPR002885 -
Vimu6g02793 910 Gene3D Tetratricopeptide repeat domain 512 726 IPR011990 GO:0005515
Vimu6g02793 910 Pfam Pentatricopeptide repeat domain 670 715 IPR002885 -
Vimu6g02793 910 Pfam PPR repeat family 757 802 IPR002885 -
Vimu6g02793 910 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02793 Vimu-Chr6 24541760 24546751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02793 651 879 Miscellaneous Gene Families AT4G11690 21.552 1.63e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02793 - - gmx:102661989 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02793 6 24541760 24546751 Vimu6g02793 6 24541760 24546751 ECH