Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02763 ATGCAACACTTTCACACAAGATCTTCCAATGCCTCCTCCCAATCCAAGTTCGGCAAGAAACGCGGTAGCTACAACTGCGGCCGCTGTGGTCTCCCTAAGAAGGGCCATATCTGCACCGTCAGTACTCCGGCCACCTCCACTTCTGCCACTCCTTCCCGTTCTTCTCTCTCTGTGGTGGCATCTGCTCCTTCCTCCTTCTCCGCCGCTGGCTGCCCTCCTCTCCACCCGCGTCGTGCTCTGTCATTCGATGACGAAGAATCCGACGGTCTTGATCCATTGGAGTCTACGGCCGCGTGGCTCCATGGGGATGATATGGATTCGTCTGGGTTGCCGGGGAATGTTCTTTGGGACGTGCTTAAGAGGCTCCCGCCCTCTGGGCTCTTAACGGCGGCGAAGGTGTCCAGAGGCTGGAGGGATATGGCGAAAAGATTGTGGAAGGCGGCTGAGGAGTTAAAACTTAGGGTTCCGGCGAGTGTTCAGGTGGGTTTCGTGACGTCGATGTTGCAGAAGTGTCCGGGGATTGTGAGTCTCTCTCTTGTAATGGAAAGTGACTTGGATTCCACAATGCTGGCTTGCATTGCATTTTCGTGCCCCAATTTGATATTCTTGGAGATTTTGGTTTCTGATTCTGCAGTCAGTCGAATCACTGGGACTGAGTTAGGTCGATTTGTTGCTGATAAAAAGAGCCTCAAAAGCCTTAAGATGGAAGGCTGTTCTAACCTTGGAGGCTTCGTTCTTTGTTCTTCTAGTCTTTCTACCATTTGGCTGTCCGATCTGTACTCTCATTCTAAGATGGTTTTTAATTGTCCTCACTTGAGGGAGATTTCATTGAAGTTTTCGCATCGAGAAAATGACAGTACTGATCTTGCAACCATGGTTGAAGGTTTGGGAAGAAGTTGCCCCAGGTTGCAAAACATACGTATATATTCAATGCAGCTTTCTCATACTGCAGTGCTCGCTCTTACTGCTGCTCAGCTAAGGGGGCTGCGAATGCTTTCACTTGTTTCTGGATCTGATGTTACTGATGCATCTGTTGCTGCCATTGCCTCAAGCTATCCAAATCTGGAATTGCTTGATCTCAGTGGATCCAGCGTTAGTGACAGTGGCATTAGCATGATTTGCAATGTGTTCTCTGAAACATTGACACGACTCCTTCTAGCTCTTTGCCCTAATGTGACTTCAAGTGGCATTCAGTTTGCTACTGCCCAATTGCCACATCTTGAAATTATGGACTGTGGCATGACAATATGTGAACCAGATTCTGGCAATCCAATTGCCGATGAAAATAACCACAAACTACAGAAGATGCCTATTATTACTAATCTACACCTTACAAACCAAAAGCTAATCATCAAACACAGCTGTTTAAAGAAACTTAGTTTATGGGGATGTTCGGGCTTGGATGCCTTATATTTAAACTGCACTCAGCTCAAGGATCTGAATCTAAATTCTTGTAGAAATTTGCACCCAGAGAGACTGTTGCTTCAGTGCCCTAGTTTAGAAAATGTGCATGCGTCTGGTTGTCAGGACATGTTAGTTGGGGCTATCCAAAGTCAGGTTTCCAACGCTTTTACTGATTTGGAAAACAACTCACCTTGTAAGCGATTACCTGATGGCTCGAAAAGGGTTCGGGTCCCTCATTTAATCAATACTGAGTCGCCCGATGAAGAAACGAAGCGAAGTAGAAAGAAGAGACGACTTTGTAACGTGCTCCTGGATTGA 1722 0.4681 MQHFHTRSSNASSQSKFGKKRGSYNCGRCGLPKKGHICTVSTPATSTSATPSRSSLSVVASAPSSFSAAGCPPLHPRRALSFDDEESDGLDPLESTAAWLHGDDMDSSGLPGNVLWDVLKRLPPSGLLTAAKVSRGWRDMAKRLWKAAEELKLRVPASVQVGFVTSMLQKCPGIVSLSLVMESDLDSTMLACIAFSCPNLIFLEILVSDSAVSRITGTELGRFVADKKSLKSLKMEGCSNLGGFVLCSSSLSTIWLSDLYSHSKMVFNCPHLREISLKFSHRENDSTDLATMVEGLGRSCPRLQNIRIYSMQLSHTAVLALTAAQLRGLRMLSLVSGSDVTDASVAAIASSYPNLELLDLSGSSVSDSGISMICNVFSETLTRLLLALCPNVTSSGIQFATAQLPHLEIMDCGMTICEPDSGNPIADENNHKLQKMPIITNLHLTNQKLIIKHSCLKKLSLWGCSGLDALYLNCTQLKDLNLNSCRNLHPERLLLQCPSLENVHASGCQDMLVGAIQSQVSNAFTDLENNSPCKRLPDGSKRVRVPHLINTESPDEETKRSRKKRRLCNVLLD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02763 573 Gene3D Ribonuclease Inhibitor 143 418 IPR032675 -
Vimu6g02763 573 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g02763 573 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g02763 573 SMART LRR_CC_2 326 351 IPR006553 -
Vimu6g02763 573 SMART LRR_CC_2 300 324 IPR006553 -
Vimu6g02763 573 SMART LRR_CC_2 352 376 IPR006553 -
Vimu6g02763 573 SMART LRR_CC_2 474 497 IPR006553 -
Vimu6g02763 573 ProSiteProfiles F-box domain profile. 104 148 IPR001810 GO:0005515
Vimu6g02763 573 SUPERFAMILY RNI-like 195 512 - -
Vimu6g02763 573 MobiDBLite consensus disorder prediction 531 560 - -
Vimu6g02763 573 Pfam F-box domain 108 143 IPR001810 GO:0005515
Vimu6g02763 573 SUPERFAMILY F-box domain 108 148 IPR036047 GO:0005515
Vimu6g02763 573 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 135 467 - -
Vimu6g02763 573 Gene3D Ribonuclease Inhibitor 421 548 IPR032675 -
Vimu6g02763 573 Gene3D - 103 142 - -
Vimu6g02763 573 FunFam Uncharacterized protein 103 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02763 Vimu-Chr6 24196409 24201210 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02763 - - gmx:100792669 863.218