Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02739 ATGTGTCATTTTGTTCTTCCTCAGAAGGCTCAGTCTGGTAATATTGTAGCATTTGACGCCTTTGAACAGGAACAATTGGAAGTGTGTTTGATGGAAAGTATTTTGGTAGTGATTGCTCCAATAATCCAAGAAGATAAGGGGTCAGATTGCTTTTTGTTTCGTAAATGGGGTCGAGTAGGAAATGACAAGATTGGAGATAATAAACTGGAGGGTGAAATGTCAAAATCTGATGCAATCTGTTATTTCAAACGATTATTCTTTGAGAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACCATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGTGTTAACAAACAGGTATCAAACAAGAAAAGAAATGATAATGACAGCAAACTACCCCCGTCATTAATAGGATTGATTAAGATGCTCTTCAACTTTTCTAGATCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTAAGCAAAAGCAATATCCAAAACGGGTTTGAAGCATTGACGGAGATACAAAATCTGTTAAAACTTACTGATCCTGATCCATCAATCAAGGAAAGCTTACTTATTAATGCCAGCAACCGGTTCTTCACCATGATCCCTTCTATTCATCCACATATTATTAGGGATGAAGATGACTTTAAGTCCAAGGTGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCTAGATTAGTTGGATTTGATGCCAACAATGAGGACTCAATTGATGATAGTTATAAGAAGCTCCACTGCGATATATCTCCACTTCCTCATGATAGTGAAGATTTTTGTTTAATTGAAAAGTTTCTCCATAATACTCATGCCCCTACACATACGGACTGGAGTCTTGAGCTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATAGCCCCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGGAAAGGGGTGTACTTTGCGGACCTGGTCAGCAAAAGTGCCCAGTATTGCTTCACTGATAAGAAAAACCCTGTTGGTCTAATGCTATTGAGTGAAGTTGCACTTGGAAACATCTATGAGCTCAAGAAAGCTAAGGCTAGTCTGCTTTAA 1227 0.3945 MCHFVLPQKAQSGNIVAFDAFEQEQLEVCLMESILVVIAPIIQEDKGSDCFLFRKWGRVGNDKIGDNKLEGEMSKSDAICYFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSNKKRNDNDSKLPPSLIGLIKMLFNFSRSAMMEFEINMSEMPLGKLSKSNIQNGFEALTEIQNLLKLTDPDPSIKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVVKMLEALQDIEIASRLVGFDANNEDSIDDSYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNIYELKKAKASLL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02739 408 ProSiteProfiles WGR domain profile. 1 109 IPR008893 -
Vimu6g02739 408 SUPERFAMILY ADP-ribosylation 264 403 - -
Vimu6g02739 408 FunFam Poly [ADP-ribose] polymerase 124 264 - -
Vimu6g02739 408 PANTHER DNA LIGASE 41 404 - -
Vimu6g02739 408 Pfam Poly(ADP-ribose) polymerase catalytic domain 275 404 IPR012317 GO:0003950
Vimu6g02739 408 SMART WGR_cls 31 104 IPR008893 -
Vimu6g02739 408 Gene3D - 121 264 IPR036616 GO:0003950
Vimu6g02739 408 ProSiteProfiles PARP catalytic domain profile. 255 408 IPR012317 GO:0003950
Vimu6g02739 408 Pfam WGR domain 41 99 IPR008893 -
Vimu6g02739 408 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 132 265 IPR036616 GO:0003950
Vimu6g02739 408 CDD parp_like 132 407 - -
Vimu6g02739 408 Pfam Poly(ADP-ribose) polymerase, regulatory domain 132 261 IPR004102 GO:0003950
Vimu6g02739 408 Gene3D - 265 407 - -
Vimu6g02739 408 SUPERFAMILY WGR domain-like 41 114 IPR036930 -
Vimu6g02739 408 ProSiteProfiles PARP alpha-helical domain profile. 131 248 IPR004102 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02739 Vimu-Chr6 23937834 23941217 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02739 K24070 - gmx:100800968 681.789