Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02687 ATGAGGGGTCGCGGGAGTTGGATGTGGTGGAAAGGCAAAATCGAAAACTTGAAAGAAAGTAAAGAGCGAAAAAGAAAAGTGGCGCGAGCGCTTAAAATGAAAACGTCATCTTTGGGAGGCGGCAATGAAATCTACGGCCGCGCTCTAGCTTCTAGTCAAGAAATCTCAGCCGTCCACTTTGAGTTTGTTCAAGAGGCCGGTGTTACTTCCTTGCAACCACCTTTTCTGCGAGTTCGTTACTTCTTTATCTTTGTTGTATATTCATGCTTAACTGATTGCGTAACAACTGGGACTGGTTCTGAATGTGCTGCTTGTAATGCAAAATACGCTCAAACAGGTGATGAGAGGGTTTTGAAGCCATGCCAGGCAATTCTTAATTCAACTTCTAGCAGTATACAAGCTGGCAAGCTTCCTCTGAATTTGCCTAATTTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCAGTGCATGATAAAGCTGAGGAGCTTGAGTTGTCTCATGGGAGAGGGAAGCCTAATCTGATGCAATCTTTCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCATCCACTACCTCCTGATAGATTGGGAAACTCTTCCTTAAAGAGAGCTTGTACCGGAAATGGAAATTTGAATGAGAAAATGGGACAACTAAGGTCAGAAAGTTCAGCCTCGGAAACTGAGGGTCTCGAAAGGGATCCCAAAAGACAGAAAGTTCAGCCTACAGATGCTCCAAATGACTTTACTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCCAAAACCTCTGAGGCTACTGGACCAATGCTGCATTATGCTAATGGAAACTTAGTTACTGGAGATGCAGCAATTAAGCCAAATGTTATACCTGTGCATAGAGTTTGCATTGACTGCCAGCTGAAAACAGCACTGAATCTTAATTTGCTCAAAACCATTTACAATGCAACCAGGGCACCACAAGTGTACTTTGTTGATGAAGTGGTTAAGAATCTCAAGGCGGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCGGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTCCTTGTGCACTTGACATCCCAGCATGTCGTTGGGATCATGAGGATTTTCTTTTGCTCTGCCCCTTCCATTCAAACGTCAAATTTCCACATGAGAAATCCAGGTCTAAGAAGCAGGCAGTGCGGAAGCATCCCAATTTGCCTCATTTGCCATCACACCACTTAAATACTCTTGAAGCTTCACAGGATGAGGGTAAAAGTATGGTTTTCTGTGGATCTGCTTTATCAAATGAGGAAAAGGTACTTTTGCTCAATTATGCAAGTAAGGTTGGTGCAACAGTGACGAAATTCTGGACCTCAAATGTTACACATGTAATAGCGTCAACTGATGCTAATGGAGCATGCTCCAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTACTAAAACTGGATTGGATAAAAGCATGCATGGAAGAGAAAAACCCCGTAGAAGAAGAACCATATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCGGGTAGACTTAAGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTTGAAGAGTTAATTGAAGTGGGTGGGGGTGCCGTTTTGAGAAGCAAGGAAGAATTGGAAGCTCAAAGACATGAATGCAAAGTGAATTCTCCAAAGTTTCTTGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTAGGGGAAGAAGTATCAATTCTCTGGCAAAGACTCAACGATGCAGAGGATTTAGCTGCCAATACTTTACAAGTGATTGGTCACACATGGATTCTGGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAA 2052 0.424 MRGRGSWMWWKGKIENLKESKERKRKVARALKMKTSSLGGGNEIYGRALASSQEISAVHFEFVQEAGVTSLQPPFLRVRYFFIFVVYSCLTDCVTTGTGSECAACNAKYAQTGDERVLKPCQAILNSTSSSIQAGKLPLNLPNLNKVGVVKNLKSKIAVHDKAEELELSHGRGKPNLMQSFQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRACTGNGNLNEKMGQLRSESSASETEGLERDPKRQKVQPTDAPNDFTPTGSICSFCQSSKTSEATGPMLHYANGNLVTGDAAIKPNVIPVHRVCIDCQLKTALNLNLLKTIYNATRAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCALDIPACRWDHEDFLLLCPFHSNVKFPHEKSRSKKQAVRKHPNLPHLPSHHLNTLEASQDEGKSMVFCGSALSNEEKVLLLNYASKVGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEEPYEISVDNQGCQGGPRAGRLKALANEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGAVLRSKEELEAQRHECKVNSPKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02687 683 MobiDBLite consensus disorder prediction 229 252 - -
Vimu6g02687 683 FunFam Breast cancer type 1 susceptibility protein homolog 459 565 - -
Vimu6g02687 683 Pfam BRCT domain, a BRCA1 C-terminus domain 571 680 IPR001357 -
Vimu6g02687 683 FunFam BRCA1-associated RING domain protein 1 571 676 - -
Vimu6g02687 683 Pfam BRCA1 C Terminus (BRCT) domain 472 535 IPR001357 -
Vimu6g02687 683 SMART BRCT_7 571 676 IPR001357 -
Vimu6g02687 683 SMART BRCT_7 454 538 IPR001357 -
Vimu6g02687 683 Pfam PHD-like zinc-binding domain 352 418 - -
Vimu6g02687 683 MobiDBLite consensus disorder prediction 189 276 - -
Vimu6g02687 683 ProSiteProfiles BRCT domain profile. 458 548 IPR001357 -
Vimu6g02687 683 CDD ePHD 348 418 - -
Vimu6g02687 683 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 164 681 IPR031099 GO:0006281|GO:0006974
Vimu6g02687 683 ProSiteProfiles BRCT domain profile. 569 683 IPR001357 -
Vimu6g02687 683 SUPERFAMILY BRCT domain 573 681 IPR036420 -
Vimu6g02687 683 Gene3D BRCT domain 459 564 IPR036420 -
Vimu6g02687 683 MobiDBLite consensus disorder prediction 429 443 - -
Vimu6g02687 683 SUPERFAMILY BRCT domain 462 549 IPR036420 -
Vimu6g02687 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 421 IPR013083 -
Vimu6g02687 683 MobiDBLite consensus disorder prediction 253 268 - -
Vimu6g02687 683 ProSiteProfiles Extended PHD (ePHD) domain profile. 280 419 IPR034732 -
Vimu6g02687 683 Coils Coil 14 34 - -
Vimu6g02687 683 CDD BRCT_Bard1_rpt1 463 541 - -
Vimu6g02687 683 MobiDBLite consensus disorder prediction 428 448 - -
Vimu6g02687 683 Gene3D BRCT domain 571 676 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02687 Vimu-Chr6 23440423 23445175 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02687 K10683 - gmx:100784883 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02687 6 23440423 23445175 Vimu6g02687 6 23440423 23445175 ECH