LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02673	ATGGCAGATAGTGAATCCGTTGCTACCGAAGCATCCGCCCATTCAGCTGCTGAGGCATATGCTTCGACTGGTTATGCCGAGTCTGGTTCAAATCCTGCTCTCGAGGCAGGTGCTACTACTGATCAACCGGCTGGAGAAGGAGCTCAGTCCACTTCAACGTATGGATTTGGTTATTCTAATACTGGTGATGTGAATGCGTATACTGGGGATCCCAATTCTGTTCTACAACAATCCCAATTCAATGCAACTGGTGATACCAAGCCAGCTGGTGGAGTGCCGGATGCGAACGAGGCCTCTGCTGGGGTTGGAAGCACTGCTACTGAGCCTGCTCTGACTTCTAACTACAGTTCATCTGTCAATGGTTCAGTGACGAACGCTGCTGGACTTGAAAACGGAAATGCATTGGAAAATGTTGACGGGTCAGCTGATGAAAAACAACTTGCAGATGGCTACGGAGCTGCCTTGTCTGCTGAGGAAGATCGACTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTCAGTGCCTGGACTTCCTTGATTGAAGAAACAGAGAAGGTACCCGAGGACAATATTCTGAAGATTCGAAGAGTTTATGATTCCTTTCTGGCAGAATTCCCCTTGTGCTACGGTTATTGGAAGAAATATGCTGACCATGAGGCACGACTTGGCTCTATAGATAAAGTTGTTGAGGTGTATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATTTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCCGACACTGTGCATCAATTTGCAAATTGCTGCCGAGAAGATCACATCTGGTTAAGGGCTAAGATGGCCTCTATGACTGCTCCGTTTCTCAGACATAGTATGATTTATTGCAGGAAGGTAAATGCAGCGCTTTTCGAACGAGGATTGGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCTCGCCTTGCCATAATTTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAACCGACCTTTGTCAGAGTTACGAACTGCTGAAGAAGCTGCTGTAAGTGTTGCTTCAGAGGCTACTGGACAAGGTACCGAAGGAGAGGTTCATCCTGATGGTGCAGAGAAGTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATAAGAGAAGAGATCTATAAAAAAGCTAAAGAGTTCGATTCTAAGATCTTTGGTTTTGAAACAGCCATCCGAAGGCCCTATTTTCACGTCAAGCCTCTCAATGTTGGAGAGCTTGAAAATTGGCACAACTATCTGGACTTTTTAGAAAGGGAAGGTGACTTAAGCAAGATTGTGAAGTTGTATGAGAGGTGTGTCATTGCATGTGCCAATTATCCTGAGTATTGGATACGCTATGTTTTGTGTATGGAAGCCAGTGGAAACATGGATCTTGCAAATAATGTTCTTGCCCGAGCCACCCAAGTCTTTGTTAAGAGACAACCGGAGATACATCTTTTCTGTGCACGGTTTAAGGAGCAGAATGGAGATATAGAGGGTGCTAGAGCTGCCTATCAACTTGTGCATACCGAAACTTCCCCTGGTCTTCTTGAAGCAATAATCAGGCATGCCAATATGGAACACCGATTGGGAAAAATGGAGGATGCCTTCTCTTTGTATGAACAGGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCTGGGAATGCAGAGAAGGCAAGACAGATTTTAATCGAGGGGCTGGAGAATGTTTTGTTGTCAAAACCACTTCTCGAGGCCTTATTGCATTTTGAGGCTATTCAACCCTTTCCAAAGCGAGTTGATATCAACTTTCTTGAGTCATGGGTTTGCAAATTTATAATGCCTAACTCAGAGAGTCATAGTGTAGCTAGTGCAATTGAGCGTGAGGAGCTTTCTAGTATTTTTCTGGAGTTTTTGAATCTCTTTGGAGATGTTCAATCAATCAAGAGAGCAGAGGATATGCATGCCAAATTGTTTTTGCCACACAGGAGCATGTCGGAGTTGAAGAAACGTCATGCCGAGGATTTCTTATCTTCAGACAAAGTTAAAGCGTCAAGAACTTATTCTGCCCAATCACCTGCCCAATCCGTGATTGGTGCGTATCCAAATGCACAAAACCAATGGACTAATTATGGAGTACAGCCTCAAACTTGGCCTCCGGTTACACAAGCACAGGGGCAACAGTGGACTGCTGGCTACACCCAGCAGGCTTCTTACGGGGCTTATGCTGGATATGGCGGCAATTATGCAAATTCTCAATTGCCTGCAACAGTTCCACCGAGTACTGCATACGGGGCCTATCCTCCTTCTTATCCTGCTGCACAGCCGGCGGTTCCTCAACAGCCCTATGCGCAACCTGTTGCAGCTCCTGCACAGCAACCTGCTGCAGTTCCTCAAGCCTATTACGGTAGTTATTACTGA	2592	0.4464	MADSESVATEASAHSAAEAYASTGYAESGSNPALEAGATTDQPAGEGAQSTSTYGFGYSNTGDVNAYTGDPNSVLQQSQFNATGDTKPAGGVPDANEASAGVGSTATEPALTSNYSSSVNGSVTNAAGLENGNALENVDGSADEKQLADGYGAALSAEEDRLWNIVRANSLDFSAWTSLIEETEKVPEDNILKIRRVYDSFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDIWLHYCIFAISTYGDPDTVHQFANCCREDHIWLRAKMASMTAPFLRHSMIYCRKVNAALFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAIIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTAEEAAVSVASEATGQGTEGEVHPDGAEKSPKSVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIFGFETAIRRPYFHVKPLNVGELENWHNYLDFLEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGNMDLANNVLARATQVFVKRQPEIHLFCARFKEQNGDIEGARAAYQLVHTETSPGLLEAIIRHANMEHRLGKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILIEGLENVLLSKPLLEALLHFEAIQPFPKRVDINFLESWVCKFIMPNSESHSVASAIEREELSSIFLEFLNLFGDVQSIKRAEDMHAKLFLPHRSMSELKKRHAEDFLSSDKVKASRTYSAQSPAQSVIGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPATVPPSTAYGAYPPSYPAAQPAVPQQPYAQPVAAPAQQPAAVPQAYYGSYY	863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02673	863	PANTHER	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	143	857	-	-
	Vimu6g02673	863	SMART	hat_new_1	473	505	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	297	330	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	507	540	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	189	221	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	332	365	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	618	650	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	577	612	IPR003107	GO:0006396
	Vimu6g02673	863	SMART	hat_new_1	223	255	IPR003107	GO:0006396
	Vimu6g02673	863	Gene3D	Tetratricopeptide repeat domain	453	750	IPR011990	GO:0005515
	Vimu6g02673	863	MobiDBLite	consensus disorder prediction	380	407	-	-
	Vimu6g02673	863	MobiDBLite	consensus disorder prediction	81	116	-	-
	Vimu6g02673	863	Gene3D	Tetratricopeptide repeat domain	164	368	IPR011990	GO:0005515
	Vimu6g02673	863	MobiDBLite	consensus disorder prediction	100	116	-	-
	Vimu6g02673	863	SUPERFAMILY	TPR-like	166	363	IPR011990	GO:0005515
	Vimu6g02673	863	MobiDBLite	consensus disorder prediction	24	56	-	-
	Vimu6g02673	863	MobiDBLite	consensus disorder prediction	23	56	-	-
	Vimu6g02673	863	FunFam	Tetratricopeptide repeat (TPR)-like superfamily protein	452	744	-	-
	Vimu6g02673	863	SUPERFAMILY	TPR-like	417	720	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02673	Vimu-Chr6	23348260	23357972	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02673	K13217		-	gmx:100787373	1359.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g02673	6	23348260	23357972	Vimu6g02673	6	23348260	23357972	ECH