Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02671 ATGGCGTCGTCTTATCCTGGTTCCGTTAGTGCCACACAGGTTGGCTCCTACTTCGTCGGACAGTACTATCAGATTCTCCGCCAACAGCCGAATCTTGTTCACCAGTTTTACTCTGATTCCAGCAGCATGATTCGTGTCGATGGAGATTCCGTTGAAACTGCGCAAGATGTGTTGGTATGCCTTGCTAGCGCAAGCGTTTTTTTTTTTTCAACTTTGTTGTTTATGAGAAGTGGTTACACGGTGGCTATAGCTAGAGAACACAGAATAGATGCTCGATTTTCTAGGTTTTGGTTTTTAGATGTATTGGCTGGCGCTAATGCCTACTGGCTGACTGACCAGGTTAGGGTTCTCATGCAGCAAATTCATTCAATTGTGTCGTTACTGAGTTTCACTTCAATTGAGATCAAGACCATCAATTCTCTCGACTCTTGGGATGGAGGTGTGATTGTCATGGTCTCAGGTTCTGTGAAGCTAAAGGATATCACTGGGAGGCGGAAGTTCGTTCAAACCTTCTTTCTCGCTCCTCAAGAGAAGGGTTACTTTGTTCTGAATGATATTTTTCATTTTGTTGAAGAAGGTGTTACATACCCAAATATGATACCAGTGGCATCTGAAATTGACAATCAACCGCATGTGTCTGCATCTCTTGCAGAGCCACCAGCTTCAGACTACGGTTTGGAGGAAGAAGCTAGGGAATATGTAAACTCAGTTCATATTGACGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACATGAAGATCTTGAAGCCGAAATAGTTGTGGAGGAAACTTCTGCACAGGAGGCATCTCCACCAATTCACAATGTTGTGCATACTGTCCAAGAAACCCCTGCAGCTCTTGTAGAAGAGTCTTTTGAAGAGCCTCCTAAGAAAACTTACGCATCTATTTTACGAGTCGCCAAAGGTCAGCCCGTGTTATCAGCTGCTCCACAGCATGTTCCACAATACACCTTTAAAAGTGCCCCACCTTCTTCAGAGTTGAACCATGTAGCACAGCCCGCAATTCAGCAGTCGAGCCCTGTATCTGTGTATGTCCCTGAGTCAGGGTCTGAGCCAGCAGATGAAGGCTATGGACTAGAAGATGAAGGTGAAGTAACCTCTGTCTATGTGAGAAACTTGCCTGCTAACGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTTATTAGGGTTCGAAAGGAAATTGGAGTGTGCTATGCATTTGTGGAATTTGAAGATATCATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCAATTCAGTTAGCTGGAAGACAGGTATACATAGAAGAGCGGAGGCCAAACAGTGGCAGTGCAGTTCGAGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGCAAGGAACATGGGAAGGGGAAGTAATCTGGATAATTCAGACTACTCCAGACTAAGAGGCGATGGTTATCTTCAACGTAGTTCACGATGA 1539 0.4496 MASSYPGSVSATQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAQDVLVCLASASVFFFSTLLFMRSGYTVAIAREHRIDARFSRFWFLDVLAGANAYWLTDQVRVLMQQIHSIVSLLSFTSIEIKTINSLDSWDGGVIVMVSGSVKLKDITGRRKFVQTFFLAPQEKGYFVLNDIFHFVEEGVTYPNMIPVASEIDNQPHVSASLAEPPASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLHEDLEAEIVVEETSAQEASPPIHNVVHTVQETPAALVEESFEEPPKKTYASILRVAKGQPVLSAAPQHVPQYTFKSAPPSSELNHVAQPAIQQSSPVSVYVPESGSEPADEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAVRGGRRGRGRGSYQADAPRGRFGARNMGRGSNLDNSDYSRLRGDGYLQRSSR 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02671 512 Gene3D - 363 492 IPR012677 -
Vimu6g02671 512 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 503 IPR039539 -
Vimu6g02671 512 SMART rrm1_1 379 451 IPR000504 GO:0003723
Vimu6g02671 512 Gene3D - 9 72 - -
Vimu6g02671 512 Pfam Nuclear transport factor 2 (NTF2) domain 118 189 IPR002075 -
Vimu6g02671 512 Pfam Nuclear transport factor 2 (NTF2) domain 14 57 IPR002075 -
Vimu6g02671 512 SUPERFAMILY RNA-binding domain, RBD 375 483 IPR035979 GO:0003676
Vimu6g02671 512 Gene3D - 91 193 - -
Vimu6g02671 512 CDD NTF2 10 191 IPR018222 -
Vimu6g02671 512 SUPERFAMILY NTF2-like 10 190 IPR032710 -
Vimu6g02671 512 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 189 IPR018222 -
Vimu6g02671 512 MobiDBLite consensus disorder prediction 454 512 - -
Vimu6g02671 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 443 IPR000504 GO:0003723
Vimu6g02671 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 455 IPR000504 GO:0003723
Vimu6g02671 512 CDD RRM_SF 380 451 - -
Vimu6g02671 512 FunFam Nuclear transport factor 2 family protein 367 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02671 Vimu-Chr6 23340157 23345426 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02671 - - gmx:100787900 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02671 6 23340157 23345426 Vimu6g02671 6 23340157 23345426 ECH