Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02670 ATGCTGCTAAGAAGCTCTTCAACGCCAGTTCTTGGATCCCTCCTTTCCAACTTCACAGATAGTCCTAATAACAGTATTCACTCAGAAAGCAGCCATGCAATTAAGCACTTTCCACCAACCAGCGTTCCCCAACATTATCACAGACTTCATGTCCCCCAAACTGGGTCCTTCACTCTCCCTTCCTTCTCATGTGGTTCTTCCCCAATCTCTCCCTCAATTGGTGAGCTTGAAAGGCAAAACAAAGGCTTTAGAAGAGTTCAATCTGATGGGAACTTGCAAGACTTAGCCTACTCCTGCAACAACGAAGACATATTGGAATTTTCAGACCCTTCCAAGAGGTTTCCAACGAGGAACAGATGCTTGGTGCTGGAGACAATTCCTTCTTTCTCGCTTGGTAAGCGCAACGGCTTGCGTCTAGAAGAGGAAGATGAAGAAATGGAAAGTGAGAGTGAAGAAGGGGAGGAGAAGGGGGGAGAGGGGTTGAGTGTGGTGAATGGTGTGATATTGAGTGAAGCTTGGAAAGCGAAAGATGGAGTTTGCAGAGTGAGTTTTGGTGAGCAGGAAGAGGTTGGTAGTGGTAAAGAAATGTATCTTGCAAAGGGGCTTGGGGTAGAGTGCTGCGGGGATGGCATAGGTGGCTGCATAGGGGGTGGTGGAGGTAGTAGTGATCACAATCCTTTGGATTCTGGAGGGAATGATGGAGATAGGCATGAGGTGGAGGAGTATTACAAGAAAATGGTGAAAGAAAATCCAGGGGATCCTTTATTTCTGAGGAATTATGCTAATTTTTTGTATCAGTGCAAACAGGATTGTGAAGGAGCAGAGGAGTACTATTCTCGTGCCATACTGGCAGACCCAAATGATGGAGATGTTTTATCACAGTATGGGAAGCTGGTTTGGGAGGTACACCATGACCAAGAACGTGCCTCCAGCTATTTTGAAAGAGCAGTCCAAGCCTCTCCTGAAGACAGCCATGTACATGCAGCATATGCTAGTTTCCTTTGGGACGCAGAGGAAGAGGAAGATGGTAACAATGAAGCACAGTGTTTGCCGCCTCATTCTCATCAAGGAGCTATGGCTACAGCAGGGTTGGTTGGTTCTGTTCAGAAGGCTGCACATTCTATTAATAAGACAAATCTACGATCTCTAGCTTTGAGTTTCTGTAGCACAGTTGGTTCTTTTCCTTTGTCAGCAAACTAA 1200 0.46 MLLRSSSTPVLGSLLSNFTDSPNNSIHSESSHAIKHFPPTSVPQHYHRLHVPQTGSFTLPSFSCGSSPISPSIGELERQNKGFRRVQSDGNLQDLAYSCNNEDILEFSDPSKRFPTRNRCLVLETIPSFSLGKRNGLRLEEEDEEMESESEEGEEKGGEGLSVVNGVILSEAWKAKDGVCRVSFGEQEEVGSGKEMYLAKGLGVECCGDGIGGCIGGGGGSSDHNPLDSGGNDGDRHEVEEYYKKMVKENPGDPLFLRNYANFLYQCKQDCEGAEEYYSRAILADPNDGDVLSQYGKLVWEVHHDQERASSYFERAVQASPEDSHVHAAYASFLWDAEEEEDGNNEAQCLPPHSHQGAMATAGLVGSVQKAAHSINKTNLRSLALSFCSTVGSFPLSAN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02670 399 SUPERFAMILY TPR-like 234 342 IPR011990 GO:0005515
Vimu6g02670 399 SMART hat_new_1 304 336 IPR003107 GO:0006396
Vimu6g02670 399 SMART hat_new_1 234 266 IPR003107 GO:0006396
Vimu6g02670 399 SMART hat_new_1 269 301 IPR003107 GO:0006396
Vimu6g02670 399 MobiDBLite consensus disorder prediction 134 159 - -
Vimu6g02670 399 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 342 - -
Vimu6g02670 399 Gene3D Tetratricopeptide repeat domain 231 348 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02670 Vimu-Chr6 23333888 23335559 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02670 - - gmx:100812713 501.901