Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02657 ATGGAAGAGAATGATGCATTGAGGGCCATGGACGCTGAGCAACTGAGAGAGCACGCTCATAAGATGGTCGATTTCATTGCTGATTACTACAAAACCATTCAAAACTTCCCCGTTCTAAGCCAAGTCCAGCCAGGTTATCTGGGGAAGCTTTTACCAGATTCTGCTCCCGAGTATCCTGAGTCCTTGCAAAATGTTTTGGACGATGTAAAGGAGAAAATACTCCCTGGGGTGACGCATTGGCAAAGTCCGAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTTGGAGAGATGCTCAGTGCGGGTCTTAACATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCCACTGAACTTGAAAGCATCGTTCTTGACTGGCTGGCTAAGGCGTTCCAGTTGCCTGAAGATTTCTATTCTAGCGGGAAAGGTGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTACTAGTTGTCCTATTAGCTGCACGTGACAAGATCTTAAGAAGGCTTGGAAGGAGTGCCCTTCCTAAGCTTGTGATCTATGCATCTGATCAAACACACTCTGCTTTACGAAAAGCTTGTCAGATAGCAGGACTCAATCCAGAGCTTTGCAAGTTGCTTAAAGCTGATTCTGCCACAAATTATGCACTCTCTCCTGAAGTACTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGCACCACTTCGTCGACAGCTATTGATCCCCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAATCTTTGGTTTCACGTGGATGCTGCTTATGCTGGCAGTGCTTGTATATGTCCAGAGTACCGCCACTGCTTTGACGGTATTGAAGAAAGTGACTCATTTAACATGAATGCACATAAATGGTTCCTCACCAACTTTGACTGTTCAGTACTTTGGGTTAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGTCGTCGCTTTAGATCATTAAAATTGTGGATGGTTTTGCGACTTTATGGTTTGGAAGGACTGCGAAGTCACGTAAGAAACCACATTGAGTTAGCTGCTTATTTTGAAGAGCTTGTTAGTCAGGACACAAGATTCAAGGTCGTTGTACCTCGTACATTCTCCTTAGTTTGCTTTCGGCTATTGCCCCCTCTCAATTCTGAAGATCATGGTAATAAACTAAATAGCGATCTACTCGACTCAGTAAATTCAACAGGAAATATTTTCATAACACACACGGTTCTATCAGGTGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCACTACTGCGTGGCAGATTTTTCAAGAGAAAGCCACTGCTCTACTTGGGAGTTTACAAGATTAA 1419 0.4362 MEENDALRAMDAEQLREHAHKMVDFIADYYKTIQNFPVLSQVQPGYLGKLLPDSAPEYPESLQNVLDDVKEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELESIVLDWLAKAFQLPEDFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRLGRSALPKLVIYASDQTHSALRKACQIAGLNPELCKLLKADSATNYALSPEVLSEAISNDIAGGLVPFFLCATVGTTSSTAIDPLPALGKIAKTNNLWFHVDAAYAGSACICPEYRHCFDGIEESDSFNMNAHKWFLTNFDCSVLWVKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHVRNHIELAAYFEELVSQDTRFKVVVPRTFSLVCFRLLPPLNSEDHGNKLNSDLLDSVNSTGNIFITHTVLSGEYILRFAVGAPLTERRHVTTAWQIFQEKATALLGSLQD 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02657 472 Gene3D - 5 90 - -
Vimu6g02657 472 Gene3D Aspartate Aminotransferase, domain 1 365 472 IPR015422 GO:0003824
Vimu6g02657 472 Pfam Pyridoxal-dependent decarboxylase conserved domain 44 398 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vimu6g02657 472 Gene3D - 91 364 IPR015421 GO:0003824
Vimu6g02657 472 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 7 467 - -
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 380 399 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 147 167 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 38 55 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 337 352 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 56 75 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 82 101 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 103 121 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 122 141 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 PRINTS Aromatic-L-amino-acid decarboxylase signature 15 34 IPR010977 GO:0006520|GO:0016831
Vimu6g02657 472 SUPERFAMILY PLP-dependent transferases 10 463 IPR015424 -
Vimu6g02657 472 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 300 321 IPR021115 GO:0016831
Vimu6g02657 472 FunFam Histidine decarboxylase 10 90 - -
Vimu6g02657 472 CDD DOPA_deC_like 85 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02657 Vimu-Chr6 23249107 23255744 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02657 K01593 - gmx:100791074 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02657 6 23249107 23255744 Vimu6g02657 6 23249107 23255744 ECH