Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02653 ATGGAGGAAGATGGTGACATATACGACGGTGTTAGAGCTCAGTTTCCTCTGTCATTCGGGAAGCAATCGAAGCCTCAAACGCCTCTGGAAGCCATCCACAATGCGACACGTCGTTCAACTTCCACTTCCAATCCCAATTCCAAAACCACCGACCAACTTCCCTCTCTCTCCTCCTCTTCCAGGGAATGGCTCAATTCCCTCCGTCCTTCCAAAAACCCTATCCCACCGCCGCCTGCCGATCACGACGATGCCCCTCTCGTGGGACCTCCTCCGCCTCCGCCCTCAGCTTCCGACGTCGAGGACGAGGACGGCGACATGATTGGCCCGCCCCCGCCGCCAACCAACGCGTCGGAGTCCGAAGACGATTTGGATGAAGACAAAGTAGGGACCCGCTTCCGGATTCCCCTTAGTAACGAAATTGTTCTCAAGGGCCATACCAAGAAGACAGGCCTCAGCTACCTAAATGAGCACCTGCTGCAGGTTGTGTCAGCTCTTGCTGTGGATCATACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATGCTCGATTGGAATCTTTTCGTCAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCTGATCGCTTTTTGTGCGTCACTGGATCAGCTCAAGCAAAGGTGGGGATGGCATCACTTTCTGCTAATTTTTTGTGTGTCTGTGATCCTGCACTAATTCTGCCTTTTGTCCTACCACAGATTTATGACCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATTTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAAGATGGCTCACTACGCATATGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTTTGGGAATTTTACCAGTCTTCTTCCATTGTAAATGTTTTCATTGGAGTAGTTCCATGCACTGTCATTAAACCAAAGCTCGCAAGACCTGGAAGAGTTCCTGTAACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCGATCCAGATTTGGAATATTAAGCCTGGTTGGGGGAGTAGGCCAGACCTACACATTGAAAAAGGACATGAAGATGATATTAGTGGTCTGAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTACGCAAAATAAAAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCTCGACAGGAGGTTTATTGTGCTTCTTCGATAGATTAAACCTTGAGCTTGTTTCAAGAGTCGGCATATCATCCACTTGCAGTGTTGTTCAGTGTTATTGGCATCCTAAACTGAATCAGATACTTGCAACTACTGGTGATAAAAGTCAAGGAGGGACTCACGTACTATATGATCCAACCCTAAGTGAGAGAGGGGCTCTTGTATGTGTTGCACGGGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCTTTACCACTATTTAGAGATCAGCCAAGCCGAAAGCGACAGCGAGAGAAAGTACTGAAGGATCCATTGAAGTCCCATAAACCTGAATTACCAATTACAGGTCCTGGATTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGCATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCGAAGGATCCAAAATTCATTGCTCCAGCATACGCAGAAACCCAACCTGAGCCAGTTTTTGCTAAGTCAGATTCTGAGGATGAAGATAAATGA 2022 0.458 MEEDGDIYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSTSTSNPNSKTTDQLPSLSSSSREWLNSLRPSKNPIPPPPADHDDAPLVGPPPPPPSASDVEDEDGDMIGPPPPPTNASESEDDLDEDKVGTRFRIPLSNEIVLKGHTKKTGLSYLNEHLLQVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKVGMASLSANFLCVCDPALILPFVLPQIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVWEFYQSSSIVNVFIGVVPCTVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSTGGLLCFFDRLNLELVSRVGISSTCSVVQCYWHPKLNQILATTGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEDK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02653 673 MobiDBLite consensus disorder prediction 570 590 - -
Vimu6g02653 673 MobiDBLite consensus disorder prediction 652 673 - -
Vimu6g02653 673 MobiDBLite consensus disorder prediction 70 97 - -
Vimu6g02653 673 Pfam WD domain, G-beta repeat 396 430 IPR001680 GO:0005515
Vimu6g02653 673 Pfam WD domain, G-beta repeat 141 187 IPR001680 GO:0005515
Vimu6g02653 673 Pfam WD domain, G-beta repeat 358 384 IPR001680 GO:0005515
Vimu6g02653 673 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Vimu6g02653 673 SMART WD40_4 135 187 IPR001680 GO:0005515
Vimu6g02653 673 SMART WD40_4 197 236 IPR001680 GO:0005515
Vimu6g02653 673 SMART WD40_4 272 315 IPR001680 GO:0005515
Vimu6g02653 673 SMART WD40_4 340 384 IPR001680 GO:0005515
Vimu6g02653 673 SMART WD40_4 391 430 IPR001680 GO:0005515
Vimu6g02653 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 432 - -
Vimu6g02653 673 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 256 672 - -
Vimu6g02653 673 Gene3D - 264 531 IPR015943 GO:0005515
Vimu6g02653 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 432 IPR001680 GO:0005515
Vimu6g02653 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 317 - -
Vimu6g02653 673 MobiDBLite consensus disorder prediction 19 67 - -
Vimu6g02653 673 Gene3D - 128 247 IPR015943 GO:0005515
Vimu6g02653 673 MobiDBLite consensus disorder prediction 17 125 - -
Vimu6g02653 673 ProSitePatterns Trp-Asp (WD) repeats signature. 302 316 IPR019775 -
Vimu6g02653 673 SUPERFAMILY WD40 repeat-like 133 519 IPR036322 GO:0005515
Vimu6g02653 673 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Vimu6g02653 673 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Vimu6g02653 673 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Vimu6g02653 673 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Vimu6g02653 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 324 IPR001680 GO:0005515
Vimu6g02653 673 MobiDBLite consensus disorder prediction 570 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02653 Vimu-Chr6 23193158 23196951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02653 279 503 Miscellaneous Gene Families AT5G08390 23.770 1.56e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02653 K24752 - gmx:100815380 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02653 6 23193158 23196951 Vimu6g02653 6 23193158 23196951 ECH