Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02645 ATGTTTTACTGTAAAATATTTCTCTTACCTGATGTGTTGAATTTGGCCAGTGGTAGCAATGTATTCAATTTGCTCGCAAGGAGAGAAATCTCACCCCGGACCAAATATGTGGCCAAATGGCACTGGGTTGAAGCTTCTAAGTCAAAGTCTAGTCCTTATTCTCGTCCCAAGAATGAGGTTGTGAGAGATGCAAGACGCGGTCTCCTCTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCAGCTAAGTATTGTCCCTTATTGCCTCCTCCTCGGTCTACTATTGCAGCAGCATTTAGTTCCGATGGGAAGGTTCTTGCCTCTACACACGGTGACCATACAGTGAAGATAATTGATTGTGAAACTGGAAGTTGTCTAAAGGTGTTAGTTGGCCATAGGAGAACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCGAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTACCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAAAAAGGTGAAGCATCCTCTCCTATATTTGTGTTGAAGACAAAGCGCTCACTTCGGGCTGTGCATTTTCACCCACATGCCGCGCCATATCTTTTAACTGCGGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGCTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCAGCCTACAGAACATATTAGTTTGTCCACCGAACTACCTTATGTGTCATTACCTTTCTTTTTCATGCCCTCAAATACTCTTGACGAGTCAAGAACAGAACTACAGCATTCTAGTCATGATGTGGGCTCAGGTAGCATGCAAATTGAGTCTTCTGCTATGGTACAGTTACAAGCAGATACAAGTGCAACAGAGCAATATGAGGCCACTGTGTCTCCCATGGATACATTCTCTGAGATGCCCACTAGTTCTCAAACTGGTACAGAATATCCCACCCATACTTCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGCCAACATGGAAACTCTACTAATACCTATTCTTTTAATGGTGTGCTACATGGACTGTCTAGGCAAACTGCCAACCGTGGGGTTCCCTCTGAGTTGGGTCAATTTAACCAGTTTTTTCCTTCTAGTTCAAGAGATCCAAGTGCATGGGAGTTGCCTTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAACGCTTCCTCACATGGGTGCTAGCCGTGACATTCTAGCCCAACAGATTGGTTCTTCCACAATGCCATCTAATCTTTCCAGTTCTAATAATGATGCAGCAATGCCATCTTCAGCAATAACTGGCAGCATCAGCATACCAGGTTCTTCAACGAGATCAGGTTTACGGAATCATTTTTCTCAATCCCGTCAACCTGTATCTGAATCAGGAAATCTTGCTACTTCTATTAATAATTCACATGATGGATCCGATATCCAAACAATCATGAATCGAATTCAATCAGAACTTGCCGCCACATCAGTGGCTGCTGCAGCAGCGGCAGAGTTGCCCTGCACTGTGAAGTTAAGAGTGTGGTCACATGACATAAAAAATCCTTGTGTCCCACTTAATGCCGACAGATGTCGTCTAAACATACCACATGCTGTCCTTTGCAGCGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTGGCCGCCTGTGTTGCATGTATGCTTCCTCATATAGAGGCTGATCCAGGCTTACAAACTCCAGTACACCAAGAGCCAGGTGTTGCAACATCACCAACCCGACATCCAATCTCAGCACACCAAGTTATGTATGAGTTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACATCAATTCAGTTCTCTCCTACATCTGAGCACATACTACTTGCCTATGGCCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGCAGAAACAACATTACCTATATACACAGTGCTAGAGGTATACAGGGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCGTGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGAGTCCTCCAGTATGACGGTGCTCATGCAGTGAATGGCAACGGACCAAGTTACTTTCCTGAGGAGACCATCATTGGAGTCAGTCAGTGA 2403 0.4453 MFYCKIFLLPDVLNLASGSNVFNLLARREISPRTKYVAKWHWVEASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIQPTEHISLSTELPYVSLPFFFMPSNTLDESRTELQHSSHDVGSGSMQIESSAMVQLQADTSATEQYEATVSPMDTFSEMPTSSQTGTEYPTHTSFSNGMGIGLSNLTMDGMETDETRPAEGSQHGNSTNTYSFNGVLHGLSRQTANRGVPSELGQFNQFFPSSSRDPSAWELPFLQGWLMGQSQVGVPSTLPHMGASRDILAQQIGSSTMPSNLSSSNNDAAMPSSAITGSISIPGSSTRSGLRNHFSQSRQPVSESGNLATSINNSHDGSDIQTIMNRIQSELAATSVAAAAAAELPCTVKLRVWSHDIKNPCVPLNADRCRLNIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDAETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGNGPSYFPEETIIGVSQ 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02645 800 SMART WD40_4 81 119 IPR001680 GO:0005515
Vimu6g02645 800 SMART WD40_4 122 162 IPR001680 GO:0005515
Vimu6g02645 800 SMART WD40_4 165 202 IPR001680 GO:0005515
Vimu6g02645 800 SMART WD40_4 735 775 IPR001680 GO:0005515
Vimu6g02645 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 167 - -
Vimu6g02645 800 ProSitePatterns Trp-Asp (WD) repeats signature. 149 163 IPR019775 -
Vimu6g02645 800 FunFam Activating molecule in BECN1-regulated autophagy protein 76 256 - -
Vimu6g02645 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 171 IPR001680 GO:0005515
Vimu6g02645 800 Gene3D - 78 251 IPR015943 GO:0005515
Vimu6g02645 800 MobiDBLite consensus disorder prediction 345 374 - -
Vimu6g02645 800 MobiDBLite consensus disorder prediction 345 400 - -
Vimu6g02645 800 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 19 795 - -
Vimu6g02645 800 MobiDBLite consensus disorder prediction 479 538 - -
Vimu6g02645 800 Pfam WD domain, G-beta repeat 123 162 IPR001680 GO:0005515
Vimu6g02645 800 SUPERFAMILY WD40 repeat-like 96 238 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02645 96 263 Miscellaneous Gene Families AT5G08390 25.414 3.04e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02645 K17985 - gmx:100817857 1411.36