Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02643 ATGGAGAATCATTGCGAGGTACTCGGTACCGAAGGGTTGATTAGAAAGCATGAATTTGTGAGGATCATAATTCGGTGTCTATATTCATTAGGATACAGTAGCTCTGCGGCGTGTTTGGAATTAGAATCTGGCATTTCGTACAAGTCCAATGAGCTTAAGTTACTTGAATCATTTATATTGAATGGGAATTGGGACGATAGCATTGAGTATCTTAATTCGATAAAGGATATGTTGGGGGAAACAAGGGAATCTGCCTTGTTTCTTGTTTCCAGACAGTGTGTTAGGGAGTATTTGAATTGCGGGCAAGATGAGCTAGCTTTGGCGGTGTTAAGGAAACAGGTTTCTGCCTTGGATGTGGACAGGTGCAAAGTTCACAGCCTGGCTATGTGCATGCTCTCATTTAAGGATAGGGAGTTAGCTGTTGTTGATGAAAACGATGTTGTTGTACATGATCTGAGAAGAAAGTTGTTAGCAGATTTGGAAAGTTTGTTGCCTCCTCCCATATCAGTGCCTGAAGCAAGGCTGGAGCGCTTGGTAGAATCTACTGTTACGGCCTGGGTCGATTCGTGCATGTATCATAGTTCGTCGAATCAGATATCCCTTTATGAGGATCATCGCTGCAGCAGGGATCAGATTCCTACTAGAACGACTCAGATATTGACTGGACACAAAAATGAAGTTTGGTTTGTTCAATTTTCGAATAATGGGGAGTACCTGGCCTCTTCATCCAATGATTGCACAGCCATCATATGGAAGGTGCTGGAGGATGGGATATTGACACTGAAACACACACTTAATGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTACTAACATGTGGGAACACAGAAGTTTTGAAGCTGTGGGATGTTGAAACAGGTACATGCAAGCGCACATTTGGCAATCAAGGCTTTGTTGTCAGCTCTTGCGCCTGGTTTCCCAACTCAAAACAGTTTGCGTGTGGCAGTTCCGACCCTGAAAAGGGAGTCTGCATGTGGGATTGTGATGGAAACGTAATCAAATCATGGAGAGGAATGAGGATGCCCAAGGTTGTAGATCTTGCCGTTACTCCAGACGGTGAGTATCTTATCAGCGTCTTTATGGATAAAGAAATTCGTATTCTGCATATGGGAACAAATGCAGAGCGAGTTATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTCTCAGGAGATGGTAAGTTCTTCATTGTCAATCTCAACAGTCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGATAAGCCATCCAGGTTTAATGGCCACGAGCAACACAAGTATGTGATAAGGTCATGCTTTGGTGGATTAAACAACACTTTTATCGCCAGTGGTAGTGAAAATTCACAGGTATACATTTGGAACCGTCGTAATCCGACGCCTATAGAGGTTCTATCCGGACATTCCATGACTGTGAACTGTGTGAGCTGGAACCCGAAAATACCACAAATGCTGGCATCTGCCAGTGATGATTATACGATTCCCCTAGCCCGTGGTTGTGATTCTTCCCGCCGGCAACCTTTACGGCGGCTTCTCCCGCATACGCTGAGCGCTTCTCCTCCTCTAATCAGTCCCCTGTCATTATGGTCTGATATAAATTTTGGTGTACCAATATATGAATTTTGGCATGTATATGAATGGGGGATTGTAGTCCATGAATATGTTGCAGGGGCTTTCCGTGGGGCTGATATGAGCATTGTTCCAGGAAGAATGAGGCCCACAATGATGCTCAGGGTTCTGAACAAGCAGTTTCTTGGAATTTTTGGTGATGCAGCTACTGCTGTCGCTAAGAAGCCACCCCCACCTCCTGTAGTATCGCGCAAACCGGCCTTCATTGATGCATTCTTGTACAAGATGAAGAAGAACCCAAGTCTTTTGTCGAACAAGACCATTTGGTCACGAAGATCCACTATCTTGCCAGAATTTGTTGATACTACTGTCAAGATTTACAATGGGAAAACCACTATCCGTTGTAAGATCACTGAGGGAAAAGTAGGTCACAAGTTTGGAGAGTTTGCTCTCACCAGGAAGCGCAAGACCAGAGAACAAGCCAATGCCAAAAATGTTAAACAACTTAAGAAAAAGAAGTGA 2133 0.4416 MENHCEVLGTEGLIRKHEFVRIIIRCLYSLGYSSSAACLELESGISYKSNELKLLESFILNGNWDDSIEYLNSIKDMLGETRESALFLVSRQCVREYLNCGQDELALAVLRKQVSALDVDRCKVHSLAMCMLSFKDRELAVVDENDVVVHDLRRKLLADLESLLPPPISVPEARLERLVESTVTAWVDSCMYHSSSNQISLYEDHRCSRDQIPTRTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGILTLKHTLNGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKRTFGNQGFVVSSCAWFPNSKQFACGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVDLAVTPDGEYLISVFMDKEIRILHMGTNAERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPSRFNGHEQHKYVIRSCFGGLNNTFIASGSENSQVYIWNRRNPTPIEVLSGHSMTVNCVSWNPKIPQMLASASDDYTIPLARGCDSSRRQPLRRLLPHTLSASPPLISPLSLWSDINFGVPIYEFWHVYEWGIVVHEYVAGAFRGADMSIVPGRMRPTMMLRVLNKQFLGIFGDAATAVAKKPPPPPVVSRKPAFIDAFLYKMKKNPSLLSNKTIWSRRSTILPEFVDTTVKIYNGKTTIRCKITEGKVGHKFGEFALTRKRKTREQANAKNVKQLKKKK 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02643 710 Gene3D 30s Ribosomal Protein S19; Chain A 619 704 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Vimu6g02643 710 SMART ctlh 48 105 IPR006595 -
Vimu6g02643 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 510 IPR001680 GO:0005515
Vimu6g02643 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Vimu6g02643 710 CDD WD40 217 508 - -
Vimu6g02643 710 Pfam WD domain, G-beta repeat 434 469 IPR001680 GO:0005515
Vimu6g02643 710 Pfam WD domain, G-beta repeat 301 340 IPR001680 GO:0005515
Vimu6g02643 710 Pfam WD domain, G-beta repeat 475 508 IPR001680 GO:0005515
Vimu6g02643 710 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Vimu6g02643 710 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Vimu6g02643 710 SUPERFAMILY Ribosomal protein S19 621 693 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 253 IPR001680 GO:0005515
Vimu6g02643 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 301 - -
Vimu6g02643 710 Hamap 30S ribosomal protein S19 [rpsS]. 590 701 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 FunFam WD repeat-containing protein 26 homolog 207 511 - -
Vimu6g02643 710 FunFam Ribosomal protein S19, mitochondrial 618 704 - -
Vimu6g02643 710 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Vimu6g02643 710 Pfam Ribosomal protein S19 641 693 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 Coils Coil 693 710 - -
Vimu6g02643 710 SMART WD40_4 213 252 IPR001680 GO:0005515
Vimu6g02643 710 SMART WD40_4 343 383 IPR001680 GO:0005515
Vimu6g02643 710 SMART WD40_4 427 469 IPR001680 GO:0005515
Vimu6g02643 710 SMART WD40_4 300 341 IPR001680 GO:0005515
Vimu6g02643 710 SMART WD40_4 472 512 IPR001680 GO:0005515
Vimu6g02643 710 SMART WD40_4 385 423 IPR001680 GO:0005515
Vimu6g02643 710 SMART WD40_4 258 297 IPR001680 GO:0005515
Vimu6g02643 710 SUPERFAMILY WD40 repeat-like 210 508 IPR036322 GO:0005515
Vimu6g02643 710 ProSitePatterns Ribosomal protein S19 signature. 665 689 IPR020934 GO:0003723
Vimu6g02643 710 Gene3D - 204 511 IPR015943 GO:0005515
Vimu6g02643 710 PRINTS Ribosomal protein S19 family signature 665 677 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 PRINTS Ribosomal protein S19 family signature 677 692 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 PRINTS Ribosomal protein S19 family signature 645 664 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vimu6g02643 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Vimu6g02643 710 PANTHER WD REPEAT PROTEIN 26-RELATED 3 509 - -
Vimu6g02643 710 SMART Lish 15 47 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02643 Vimu-Chr6 23111201 23120744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02643 215 371 Miscellaneous Gene Families AT5G08390 28.662 1.59e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02643 K22382 - gmx:100818922 936.791