Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02635 ATGGAGGAGGCGCTGGAACTGTCACGCGCTAAGGACACGAAGGAGAGGATGGCGGGCGTGGAGCGCCTCCACCAACTTCTGGAAGCTTCCAGAAAGAGCCTCTCGTCTTCCGAGGTGACTTCGCTCGTCGACACTTGTATGGATCTCTTGAAGGACAATAACTTCCGCGTCTCGCAGGGCGCGCTGCAGGCGCTCGCCTCCGCCGCCGTCCTCTCCGGTGACCACTTTAAGCTTCACTTCAACGCACTCCTCCCCGCTGTCGTCGACCGTCTCGGCGACGCCAAACAGCCTGTTCGAGACGCCGCCAGGCGCCTCTTGCTCACTCTCATGGAGGTTTCTTCTCCAACTATAATTGTTGAAAGGGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTTAGAGAGGAGTTTACGCGAACTGTCACAGCTGCAATTAATTTATTTGCGTCTACAGAGCTCCCACTTCAACGGGCTATCCTTCCCCCTGTTTTGCATTTGCTTAACGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAAGAAATGTATACACAAGCTGGGCCTCAATTTCGTGATGAACTTCACCGTCACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTTGAAGGGATTCAGCCAAAAGTTCGCTCTACAGATGGTATTCCAGGTGGATATATCACTGGGGAAATTAAGCATTTGAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCCTCCAGGGAGACCTCTCTTTTCGGAGGGGAAGGTGACATCACTGAGAAACCCATAGACCCTGTGAAGGTATATTCAGAGAAGGAGTTAACCAGGGAAATTGAGAAGATTGCATCTACTCTTGTGCCTGAAAAAGACTGGTCAATTCGAATTGCTGCTATGCAGAGAGTTGAAGGTCTTGTTATAGGAGGTGCTACTGATTATCCATGTTTTCGAGGGCTCTTGAAACAACTTGTTGGACCTTTAAACACACAATTGTCAGACCGAAGATCTAGCATTGTGAAGCAGGCGTGCCATCTATTGTGCTTTTTGTCAAAGGATCTCTTGGGTGATTTTGAAGCATGTGCCGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGCAACTGCAAAGTTTCTCGGGTTCTTCCCCGTATAGCTGATTGTGCAAAAAATGATCGAAATGCTGTACTTCGTGCAAGGTGTTGTGAATACGCTCTTTTGGTCCTGGAACATTGGCCTGATGCACCAGAAATACATCGATCCGCTGATTTATATGAGGATATGATAAAGTGTTGTGTTTCAGATGCAATGAGTGAGGTTCGATCTACTGCAAGGATGTGCTATAGAATGTTTGCAAAAACTTGGCCAGAGCGATCTCGTCGTCTATTTGCATCCTTTGACCCTGCCATTCAAAGGTTAATAAATGAAGAGGATGGAGGAATACATAGGCGACATGCTTCACCTTCCATTCGAGATAGAGGGGCACTGACGTCATTGGCTAGTCAGACCTCGGCTCCCTCTAATCTACCTGGTTATGGAACTTCTGCTATTGTTGCGATGGATAGAAGTTCAAGTATATCATCAGGGACATCTATCTCCTCTGGTATACTTCTATCACAAGCTAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAGAGCATGTTACATGCAAGCAAGCAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTTCCGGTCATCGAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCTGCTGTCTCCGCAACTAATCATCTGACAAGCTCTTTAACAACAGAATCAACCACTTCTGGCATCAATAAAGGTAGTAACCGAAATGGTGGTCTTGGTTTGTCTGACATAATCACCCAGATTCAAGCTTCAAAGGATTCTGCCAAGTTGTCCTATCATAGCAATGTTGGTATTGAACCTTTATCATCAATATCATCATATTCAAGTAAAAGGGCCTCTGACAGATTACAAGAAAGAAGTTCACTTGATGATAACAGTGATATTAGAGAGACTAGGAGATTTATAAAACCCAACCACGATAAGCAGTATTTGGATGCCCCTTATAGAGATGGGAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTCCAGAGACCGCTTTTGAGAAAGAATGTGGCTGGACGCATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAATCAGCTATCTCTTGGAGAGATGCCAAATTATGCAGAAGGACCCTCATCTCTTCACGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTTTGTTGCAGCAAGGGCCAAAGGGAGTTATTGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAATTGTTTTTCCAGCACTTGGATGATCCCCATCATAAAGTTGCACAAGCTGCTCTTTCAACACTTGCAGATATTGTTCCAGCATGCCGAAAGCCTTTTGAAGGTTACATGGAGAGAATATTACCCCATGTTTTTTCTCGGTTAATTGATCCTAAAGAACTTGTCAGGCAGCCATGTTCAACAACTTTGGAAGTTGTGAGCAAAACTTACAGTATAGATTCTCTTTTACCGGCATTATTACGCTCACTAGATGAACAGAGGTCCCCAAAGGCTAAATTGGCTGTTATTGAATTTGCAATCAATTCCTTTAACAAACATGCTATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCCATTACATGCATTATATCAGTGTATTCACACTTTGATTCGATTGCTGTTCTTAATTTCATTCTGAGTTTGTCAGTTGAAGAACAAAATTCTTTGAGACGAGCTTTAAAACAATATACCCCTCGCATTGAAGTAGACCTAATAAACTATCTTCAGAACAAGAAAGAAAGACAACGTTCTAAGTCTTCCTATGATTCATCTGATGTGGTGGGAACATCCTCTGAAGATGGATATGTTGGTTACTCTAGGAAGGCTCATTACCTGGGAAGGTATTCTGCTGGATCCCTTGATGGTGATGGTGGCAGGAAATGGAGTTCCCAGGATTCAACACTAGTGAAAGCTAGTCTTGGTCAAGCATCATCTGGTGAAACTCAGGAAAATCTGTATCAAAATTTTGAAACTGATCCTAATAGTGACAGTCTTACTTCAAAAACTAAAGATCTTGCGTATGCAGTCAATCCAATGGGTCAAAACTTTACCTCTCAATCTAGCCAACATAGAAATGTGGACAGTAGCATAAACTTGGAGGGTCTTTCAACTCCCCGTCTAGATGTAAATGGTTTGATGTTATCTGAGCATTTAAATGTTGCGGAAGGTTATGTAAATGACAAAGAACATCCTTCTGAATTGGCACTTAATCATCACACAGCCGAAGATGTAAAGATTAACTCCATAACAGAAACAGGACCAAGCATTCCTCAAATTCTTCATATGGTATGCAGTGGGGGTGATGGAAGCCCTGTTTCAAGTAAACGAACTGCACTTCAACAATTAGTTGATGCTTCTATATCAAATGATCATTCTATTTGGACCAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTACTGGATGATTCAGATTCGTCGGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAAAACCAGAAAGGCGACATGGAGAATTCTGTTGAGATTGTAATTGAGAAGCTGCTTCACGTTACTAAGGATATCATTCCAAAGGTCTCCAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTCTACTGGTTACTGAGGATGAGAAAACACTTGTCATTTGCATAAATTGCTTAACAAAGCTTGTAGGGCGGCTTTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTGCCCGCTCTTTTTGAAGCCTTTGGTAACCAGAGTGCAGATGTTCGTAAGACCGTTGTTTTCTGCCTAGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCGTATTTGCAAGGGCTTAACAGCACGCAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAACAATTGATGCCGTTCAAGATTAG 4338 0.4278 MEEALELSRAKDTKERMAGVERLHQLLEASRKSLSSSEVTSLVDTCMDLLKDNNFRVSQGALQALASAAVLSGDHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVTAAINLFASTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRSTDGIPGGYITGEIKHLSVNPKKSSPKAKSSSRETSLFGGEGDITEKPIDPVKVYSEKELTREIEKIASTLVPEKDWSIRIAAMQRVEGLVIGGATDYPCFRGLLKQLVGPLNTQLSDRRSSIVKQACHLLCFLSKDLLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVSRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFASFDPAIQRLINEEDGGIHRRHASPSIRDRGALTSLASQTSAPSNLPGYGTSAIVAMDRSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKVSAIESMLRGLDLSDKHNSSFRSSSLDLGVDPPSSRDPPFPAAVSATNHLTSSLTTESTTSGINKGSNRNGGLGLSDIITQIQASKDSAKLSYHSNVGIEPLSSISSYSSKRASDRLQERSSLDDNSDIRETRRFIKPNHDKQYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDDNQLSLGEMPNYAEGPSSLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGVIEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNPEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKERQRSKSSYDSSDVVGTSSEDGYVGYSRKAHYLGRYSAGSLDGDGGRKWSSQDSTLVKASLGQASSGETQENLYQNFETDPNSDSLTSKTKDLAYAVNPMGQNFTSQSSQHRNVDSSINLEGLSTPRLDVNGLMLSEHLNVAEGYVNDKEHPSELALNHHTAEDVKINSITETGPSIPQILHMVCSGGDGSPVSSKRTALQQLVDASISNDHSIWTKYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGDMENSVEIVIEKLLHVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKTIDAVQD 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02635 1445 SUPERFAMILY ARM repeat 292 1435 IPR016024 -
Vimu6g02635 1445 FunFam Protein peg1 266 513 - -
Vimu6g02635 1445 MobiDBLite consensus disorder prediction 243 267 - -
Vimu6g02635 1445 PANTHER CLASP 32 1431 - -
Vimu6g02635 1445 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Vimu6g02635 1445 MobiDBLite consensus disorder prediction 633 660 - -
Vimu6g02635 1445 MobiDBLite consensus disorder prediction 701 719 - -
Vimu6g02635 1445 SMART TOG_3 780 1029 IPR034085 -
Vimu6g02635 1445 SMART TOG_3 270 514 IPR034085 -
Vimu6g02635 1445 SMART TOG_3 1198 1437 IPR034085 -
Vimu6g02635 1445 SMART TOG_3 3 224 IPR034085 -
Vimu6g02635 1445 Gene3D - 1 221 IPR011989 -
Vimu6g02635 1445 Gene3D - 1228 1437 IPR011989 -
Vimu6g02635 1445 MobiDBLite consensus disorder prediction 695 719 - -
Vimu6g02635 1445 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Vimu6g02635 1445 MobiDBLite consensus disorder prediction 246 261 - -
Vimu6g02635 1445 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Vimu6g02635 1445 Gene3D - 267 506 IPR011989 -
Vimu6g02635 1445 Pfam CLASP N terminal 802 992 IPR024395 -
Vimu6g02635 1445 Pfam CLASP N terminal 284 500 IPR024395 -
Vimu6g02635 1445 SUPERFAMILY ARM repeat 7 402 IPR016024 -
Vimu6g02635 1445 Gene3D - 796 1020 IPR011989 -
Vimu6g02635 1445 MobiDBLite consensus disorder prediction 609 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02635 Vimu-Chr6 22960412 22974001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02635 K16578 - gmx:100820523 2624.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02635 6 22960412 22974001 Vimu6g02635 6 22960412 22974001 ECH