Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02623 ATGTCCTCACAGATCACCATTCCCAGTGACTGGTCAACAAAATTTGAGAGTGTGTGGTGTTGGTTAGCCATGTCAAAAACATCTTCAATCACTGAGACAAGGTCAGAGGTGTGGAGAACACGTGTAGGGTCTGCACTAAGAACCACCTTGGCATGCACCATAGCAGGTTGCACCTACCTTTACGGGCCAGCACCACTCCGACGCTACCTCACATACCCAGCTTTCACATACTCAACCGCACTCCTCATAGTGTCAGATGCTGCACTCGGTGACACGCTAAGAGGTTGCTGGCACGTGCTTTGCGCGAGCATCCAGGTCATGATACTCTCCCTGCTCGCTTTGCAGTTGATTGGGCCACAAAACTTCACGAATCTAGTGGCTGCACTGGCCATGGCAATTTCTGGTTTTCTCGTTGCGTTGCCTGTTGAATCCACCCACTTGGTCACGAAGCAGATAGCGTTTGGACAGCTAGTGAACGTTTACGTTAGGACTGCCATAGATGGTGCTGAAGATAGAGTCGCCATGCACACAATTCATGTGGTCTGCTCCACAGCCCTTGGAGCTGTCGCTTCTGTTCTCGCCATGTTGCTTCCTTGCCCTTCCCCTCGCTTCGCCTACTCTCAGATGATCTCTGCCTCAAACAACTCAGTTGTTGTTGGTTACTTTACTTTAGCCAAGTCTCTCTCTGCTACTGGAGTCAAGCTTCGTCAAAGTATTAGGAGTAAACTTGACACAATGGATTGGGAACAACCACAGAGAAGAATTTTCAACTCCCATAAGATTGATCTACAAGATAAACTACAATACTTGGAGTTACCGATAAGAGCTATGGGCATTGCTCTATCGACTTGTACCTTTCCTAAAAGGGTCATCGATGAGGATCTCAAAGGTATACTGCTGAAATGTAGAGGAGAATTCAACAAAAAATTAAGCCAACAATCCAACTTCTTTGCTCATTTTGATGCAGCTGCAATATCAGAGATGAAAAAAGACATTTTTACTAAAAATTTGTTAATGGCCTATAAAGATCTCCCAACCTCCTTCTTTTTATATTGCATGCATTTACTCCTAGAGGACTCATCCATTGTAAATAAAATGGATCCCATGCCGATAAAAACTTCAAAAAAGGGTAATTTTCACTGGAGCACCAACAATATTAAAGAGATTGTGATGAATTTATTTCCCTCGAAAACCAATTTGGTTTTTCCACTTAAGGCCTCTCTTTCATTAGGCTTTGCCATGTTTCTTGGTTTGACATATAACAAGGAAAATGGATATTGGTCAGGACTCACGGTTGCTCTCTGCTTCGTGACTGGACGACATTCAACCTTCTCACTAGCAAATGCACGTGGTCAAGGAACTGCAATGGGATCAATCTACGGAGTTCTTTGTTGCTTCGTTTTTCAAAGATGTATGGGTATAAGATTCTTACCTCTTCTACCATGGGTTTTTTTCTCTTCTTTTCTTATGTACAGTAGAATGTATGGTAGAGCTGGTGGCATTTCGGCAGTTACAGGGGCTTTATTAGTTATTGGTATAAACCACGATGAAAAACCAAGTAAATTTGCATTTGTTAGAATTGTTGAGGCCACGATTGGACTCATTTGCTTCGTTATTGTAGAGATACTTTTCAATCCTTTTAGAGCTTCAACTCTAGCAAAAGGTAAACTTTCAGAATGCTTGAGATCTCTTCAACATTGCATTGACCAAACTATCGTTATTCCTAGTGAAAAAGAGAAGTCGTCTTCTTTCTATCAAGCATCACAAGATGAGCATTTGAAGCTGAAATCTGTAGTCGATCAATTAGAAGACGTCACGATGGAAGCTGAATTAGAGCCAAATTTTTGGTTCATTCCATTTCATAATGGTTGCTACAGAAACATGTTGGAATCGCTGTCAACAATGGTGGATCTCTTACTTTTTGTGGCGTACTCAATGGAAAAAGTTAGGCTAATGTTGGAGAAAGATGAAACATTTTTTGTGGATCTCTGTGATCGAGTTAACGAGAATGTGGGAAATGTCAAGAACAAAGTAGGCCTCATATTGAACTGCCTTGAAAAGATAACAAGGATAGAGTCTTCTAAGGAACTTGAGAAAGAGTTAAAGAATATAAATCTTGCTGTTGATATTGATATAGAGGAATGCTCGAGGAAAGATGCATTTTGGATATGGAATGGAGATGAAGAGAAGATGGCTAACAAGGCTTGCAACAACACAGATGAGGAGATGCTTAAAGGTCAAATGCTTTTTCATTATGGTTGTTTGGGATTTTGTACTAGTAGCTTGATGAGAGAAACGATAAAGATTCACAATGAAGTAAAAGAGCTACTTATCAGTGTTGTCATCGTGCTGCTCCTCTACGATTCCTTTATTCCAAAACAAAACAAAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCAATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGTTGAAGCGTTGAAGGGTGAGTCGAAGATGAGTGATACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTATTGAGGGAGGTTGCGAAGGAGAAAACTGCCGCTGAAATCTGGGTAAAACTAGAGTCTCTATACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTTTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGGAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTAAATGCTCTTCCCAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGTCTGATCGCGGTGAAAGGGAAAGGGAAGAAACCGTCCGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATTCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTAAAGGAGTTTTTTGAGAACCTGGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGCTAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAAACTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGGCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAGAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTATAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCACAGAGAAAGGGATCAGGAGGCACAAAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAACAGAACCATTCTGGAGAGGGTCCGGTGCATGTTACTGGGATCAGGATTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGGTCGGCTGATTACTCACACTTGAAAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTGTGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATCTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGTACGCCCGGTGGGACTGAGGAAAACCAAACAGGTGAAGGGCAAGTTGAAACCGGTCGGTCGATAGCTGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGACACAGATGGTATATCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGCTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGACCTTAACCGACCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAACACCTGGAGATTGGTGGAGCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTACCATGAGATTTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCACATTGCAATTTGCATCTTGAACAGTTGGACGTCCGGACGGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATAATAGGGTGTGTCTGTTACAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGGCGGTGAAATGTTGTATCTTCTGCTTTATGTGGATGATATCCTAATGGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTTGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCACAGGAGTGCTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAACACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATACATACGGGGGTCTCTCGGTACTGGATTGTTTTTTCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCCGACTTTGCCGGATGCTTGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACGGCCGTTAGCTGGAGGTCTACACTACAGTCGGTAGTGGCTTTGTCAACTACGGAAGACGAGTATTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTCGGTTTTGATCAGAAGTCTGTATGCGTTCATTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGAGTTATCATTCCAGAACCAAACATATTGACGTCAAGCTACACTTTGTCAGAAACATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 6411 0.4483 MSSQITIPSDWSTKFESVWCWLAMSKTSSITETRSEVWRTRVGSALRTTLACTIAGCTYLYGPAPLRRYLTYPAFTYSTALLIVSDAALGDTLRGCWHVLCASIQVMILSLLALQLIGPQNFTNLVAALAMAISGFLVALPVESTHLVTKQIAFGQLVNVYVRTAIDGAEDRVAMHTIHVVCSTALGAVASVLAMLLPCPSPRFAYSQMISASNNSVVVGYFTLAKSLSATGVKLRQSIRSKLDTMDWEQPQRRIFNSHKIDLQDKLQYLELPIRAMGIALSTCTFPKRVIDEDLKGILLKCRGEFNKKLSQQSNFFAHFDAAAISEMKKDIFTKNLLMAYKDLPTSFFLYCMHLLLEDSSIVNKMDPMPIKTSKKGNFHWSTNNIKEIVMNLFPSKTNLVFPLKASLSLGFAMFLGLTYNKENGYWSGLTVALCFVTGRHSTFSLANARGQGTAMGSIYGVLCCFVFQRCMGIRFLPLLPWVFFSSFLMYSRMYGRAGGISAVTGALLVIGINHDEKPSKFAFVRIVEATIGLICFVIVEILFNPFRASTLAKGKLSECLRSLQHCIDQTIVIPSEKEKSSSFYQASQDEHLKLKSVVDQLEDVTMEAELEPNFWFIPFHNGCYRNMLESLSTMVDLLLFVAYSMEKVRLMLEKDETFFVDLCDRVNENVGNVKNKVGLILNCLEKITRIESSKELEKELKNINLAVDIDIEECSRKDAFWIWNGDEEKMANKACNNTDEEMLKGQMLFHYGCLGFCTSSLMRETIKIHNEVKELLISVVIVLLLYDSFIPKQNKTQQLAPTVGQGFKNSQGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCVEALKGESKMSDTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWVKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIGVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLIAVKGKGKKPSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDSQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQNLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGYRLKCLRTDNGLEFVSEEFNGFCTEKGIRRHKTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRSADYSHLKVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVETGRSIAENRSDEFRTDLGDDTDGISGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRLGEADLICYALNAAEDLNRPDEPRSYKEALDSSDRHLWQGAMEEELEALKKNNTWRLVELPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDNRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHGGEMLYLLLYVDDILMASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLQKVISRYRMAESKMANTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLFFQNNFQGGGYIEGFVDSDFAGCLDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEDEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQSYHSRTKHIDVKLHFVRNIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPVGH 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02623 2136 ProSiteProfiles Zinc finger CCHC-type profile. 1040 1056 IPR001878 GO:0003676|GO:0008270
Vimu6g02623 2136 PANTHER GAG-POL-RELATED RETROTRANSPOSON 1165 2132 - -
Vimu6g02623 2136 SMART c2hcfinal6 1040 1056 IPR001878 GO:0003676|GO:0008270
Vimu6g02623 2136 Gene3D - 1033 1066 - -
Vimu6g02623 2136 MobiDBLite consensus disorder prediction 1542 1563 - -
Vimu6g02623 2136 SUPERFAMILY DNA/RNA polymerases 1645 2088 IPR043502 -
Vimu6g02623 2136 MobiDBLite consensus disorder prediction 1519 1541 - -
Vimu6g02623 2136 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1646 1888 IPR013103 -
Vimu6g02623 2136 SUPERFAMILY Retrovirus zinc finger-like domains 1032 1061 IPR036875 GO:0003676|GO:0008270
Vimu6g02623 2136 CDD RNase_HI_RT_Ty1 1982 2120 - -
Vimu6g02623 2136 Pfam Integrase core domain 1267 1366 IPR001584 GO:0015074
Vimu6g02623 2136 SUPERFAMILY Ribonuclease H-like 1267 1440 IPR012337 -
Vimu6g02623 2136 ProSiteProfiles Integrase catalytic domain profile. 1265 1431 IPR001584 GO:0015074
Vimu6g02623 2136 Pfam Fusaric acid resistance protein-like 413 540 - -
Vimu6g02623 2136 MobiDBLite consensus disorder prediction 1516 1570 - -
Vimu6g02623 2136 Pfam GAG-pre-integrase domain 1188 1254 IPR025724 -
Vimu6g02623 2136 Gene3D - 1262 1441 IPR036397 GO:0003676
Vimu6g02623 2136 MobiDBLite consensus disorder prediction 1012 1034 - -
Vimu6g02623 2136 Pfam gag-polypeptide of LTR copia-type 867 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02623 Vimu-Chr6 22842297 22854764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02623 1611 2090 Receptor kinase-like Gene Family AT4G23160 37.090 4.10e-91 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02623 - - bna:106351154 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02623 6 22842297 22854764 Vimu6g02623 6 22842297 22854764 ECH