Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02622 CATGGGAAGTTGGCTCTATATAACCCTCGTCTGGCGGCTCCGCATTTCAATTCGAAAGAGTTAGAATCAGAAAAGAAGAAGAAAAAGAGAAGTGTGAAAATGTCTGGTCGTGGAAAAGGAGGTAAAGGATTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAAGTTCTTCGTGATAACATTCAGGGAATTACTAAACCTGCTATTCGCCGTTTGGCTCGCAGAGGTGGTGTGAAGAGAATCAGTGGTCTCATCTACGAGGAAACCCGTGGTGTGCTCAAGATCTTTCTTGAGAATGTTATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGAAGACTGTCACTGCCATGGACGTTGTTTATGCACTTAAGAGACAAGGCAGAACTCTCTATGGTTTTGGTGGTTAA 411 0.4526 HGKLALYNPRLAAPHFNSKELESEKKKKKRSVKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02622 136 PRINTS Histone H4 signature 110 122 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 PRINTS Histone H4 signature 95 109 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 PRINTS Histone H4 signature 38 49 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 PRINTS Histone H4 signature 122 133 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 PRINTS Histone H4 signature 73 93 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 PRINTS Histone H4 signature 53 72 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 MobiDBLite consensus disorder prediction 16 52 - -
Vimu6g02622 136 Pfam Centromere kinetochore component CENP-T histone fold 72 129 IPR035425 -
Vimu6g02622 136 SMART h44 49 123 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 PANTHER HISTONE H4 34 135 - -
Vimu6g02622 136 FunFam Histone H4 35 136 - -
Vimu6g02622 136 SUPERFAMILY Histone-fold 36 135 IPR009072 GO:0046982
Vimu6g02622 136 ProSitePatterns Histone H4 signature. 48 52 IPR019809 GO:0000786|GO:0003677
Vimu6g02622 136 CDD H4 51 134 IPR001951 GO:0003677|GO:0030527
Vimu6g02622 136 Gene3D Histone, subunit A 35 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02622 Vimu-Chr6 22840993 22841403 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02622 K11254 - gmx:100779904 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02622 6 22840993 22841403 Vimu6g02622 6 22840993 22841403 ECH