Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02596 ATGAAGATTACAACTGTGGATTTTATTGTGGCAGCGATTGTGCAGGTGCTACTAGAGCATGACCCTGGGTTGATTAAAACGTTTGCTCAGTCAAATACAACGCCTCTAATCTCTGCAGCTACACGAGGGCACTCGGATGTTGTTGAAGAGTTGCTGTCTCGGGATCCTACTCAGTTGGAGATGACAAGGGCCAATGGAAAGAATGCTCTCCATTTAGCCGCACGGCAGGGGCATGTGGATGTTGTGAAGATACTGCTGCAGAAGGATCCACAACTTGCTCGAAGAACTGATAAGAAAGGACAAACTGCACTGCACATGGCTGTCAAAGGGATTAGTTGCGATGTGGTAAAGCTCATTTTGGTTGCCGATGCAGCCATTGTCATGCTCCCTGACAGGTTTGGCAACACTGCATTGCATGTAGCCACGAGGAAGAAGAGGGCAGAGATAGTGCAAGAGCTGTTACTTCTTCCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCTCTCGACCTTGCTGAGGGGCTTCCTATAACTGAAGAAATTCTGGAGATCAAAGATTGTCTGATTCGTTATGGCGCAGTTAAAGCCAATGATCTCAACCAACCAAGGGATGAGCTGAGGAAAACCATGACACAGATTAAGAAAGATGTCTATTTTCAGCTGGAACAGACTCGAAAAACAAACAGGAATGTGAGTGGGATTGAAAATGAGCTACGCAAGTTGCACAGGGCTGGAGTCAACAATGCTGGGAACTCAGTGACGGTGGTTGCTGTGCTATTTGCTGCGGTTGCATTTGCAGCACTTTTCACAGTTCCTGGTGGGGATTATGATAATGGGATGGCAGTGATGGTACATAGTGCACCATTCAAGGCATTCTTCATATCTAATGCCTTGGCACTGTTTACATCATTGGCAGTGGTGCTGGTTCAAATCACCATTGTTAGAGGGGAGGTAAAGGCTGAGAGAAAGGTTGTGGAAGTAATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATACATTACAGCTTCTTATATAGTAGTTGGTCGGCGCAGCAAGTGGGCTGCAATACTTGTTACAGTTATAGGGGGGATCATAATGGGTGGTGTTCTGGGTACCATGACATACTATGTGGTCAAATCCAAACGCTCCCGAAGAGAGAGGAAGAAAGAGAAGAAGTCCAAGAAAGAAGGAACGTTGCGTCTTTCAAATTCTGATGAGTCAGAAATAAATCCAATCTATGCCATTTGA 1269 0.4539 MKITTVDFIVAAIVQVLLEHDPGLIKTFAQSNTTPLISAATRGHSDVVEELLSRDPTQLEMTRANGKNALHLAARQGHVDVVKILLQKDPQLARRTDKKGQTALHMAVKGISCDVVKLILVADAAIVMLPDRFGNTALHVATRKKRAEIVQELLLLPDTNVNTLTRDHKTALDLAEGLPITEEILEIKDCLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNRNVSGIENELRKLHRAGVNNAGNSVTVVAVLFAAVAFAALFTVPGGDYDNGMAVMVHSAPFKAFFISNALALFTSLAVVLVQITIVRGEVKAERKVVEVINKMMWLASVCTSVSYITASYIVVGRRSKWAAILVTVIGGIIMGGVLGTMTYYVVKSKRSRRERKKEKKSKKEGTLRLSNSDESEINPIYAI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02596 422 Pfam Ankyrin repeats (many copies) 125 175 IPR002110 GO:0005515
Vimu6g02596 422 Gene3D - 9 123 IPR036770 -
Vimu6g02596 422 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 400 - -
Vimu6g02596 422 SMART ANK_2a 65 94 IPR002110 GO:0005515
Vimu6g02596 422 SMART ANK_2a 133 163 IPR002110 GO:0005515
Vimu6g02596 422 SMART ANK_2a 99 128 IPR002110 GO:0005515
Vimu6g02596 422 SMART ANK_2a 31 60 IPR002110 GO:0005515
Vimu6g02596 422 MobiDBLite consensus disorder prediction 393 422 - -
Vimu6g02596 422 SUPERFAMILY Ankyrin repeat 12 179 IPR036770 -
Vimu6g02596 422 Pfam Ankyrin repeats (3 copies) 62 120 IPR002110 GO:0005515
Vimu6g02596 422 ProSiteProfiles Ankyrin repeat profile. 133 166 IPR002110 GO:0005515
Vimu6g02596 422 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Vimu6g02596 422 ProSiteProfiles Ankyrin repeat region circular profile. 65 88 - -
Vimu6g02596 422 Gene3D - 124 229 IPR036770 -
Vimu6g02596 422 FunFam Ankyrin repeat-containing protein ITN1 58 178 - -
Vimu6g02596 422 Pfam Domain of unknown function 249 353 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02596 Vimu-Chr6 22544536 22546015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02596 12 422 Miscellaneous Gene Families AT3G09550 73.077 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02596 - - gmx:100779710 654.825