Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02595 ATGAGTTTTGGAGTCAAGTGGACCTTGAGTGCTTACCCCGTTCTGTACAATTTTGAATTGCCTTCGCAATATTGTCGTAAAGATACGTTGAAAAAGACTATGAAGAGACAATTGACAGGTATACGGGGTGATTCTCCCCTGCAATCTGCAATACGAGCTGGGAATTTAGAATTGGTTCGGGAAATCATCTCTCAGAGTCCCGAGGGAGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCCTTATATGTTGCAGCTGATAATGGTCATCTTGATATAGTGAAGGAATTGATTAGATACCATGATGCTGGGTTGGCCGGCTTCAAAGCTCGAAATGGATTCGACGCATTCCACATCGCTGCTAAGAATGGACACTTGGGTAAGTCTCTTAATGATCTCAAATGGATATTGAAGGTCCTCATGGAGTTTATTCCTGAAATTTCAATGACTGTTGATCTGACAAACACCACTGCGTTGCATACTGCTGCAGCACAAGGACATATTGAGGTAGTAAATTTTCTCTTGGAAAATGGTAGCAGCTTGGTAACTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGTCATGTGGAGGTAGTCAAGGCCATTCTGAACAAAGAACCTGAAATTACAGTGAGAATGGATAAGAAGGGACAGACAGGGCTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTTGTGAAACTGAATTCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCAGGAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAAAGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACTGCCTTGGATGCTGCAGAGAAAAATGGTCGGTTGGAAATCTCGAACTTTCTGCAACACCGGGGAGCGCAAAGTGCCAAGTCCATCAAGTCACCCAATACAAACACAGCCCTTGAGCTGAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACTTTCAAAACACAGAGACGTATGAAAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAGGGGCTTAACAATGCCATCAACTACAACACTATTGTTGCTGTCCTAATTGCAACGGTTGCTTTTGCTGCCATATTTAATGTCCCAGGCCAGTATCCCGAGCAACAAGATAAACTCTCTCCTGGGATGTCTCCTGGGGAAGTATACATTGCTCCTGATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAACAAGCTGATGTGGGTGGCTTGTGTGCTAATTTCTGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTGGCTATAGCAGCCACAGCTATAGGGACAGTGATTATGGCAGCAACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTCGAGGCCTCAAGATTGCGAAGTCTTCGAACAACAATGAGCAGTAGGCAGTCAATGTCTTTGTCAATGATGTCAGGATCGGAGAATGAGTACAAGACAGTGTACGCCATATAA 1686 0.4265 MSFGVKWTLSAYPVLYNFELPSQYCRKDTLKKTMKRQLTGIRGDSPLQSAIRAGNLELVREIISQSPEGELKELLSKRNNSCETALYVAADNGHLDIVKELIRYHDAGLAGFKARNGFDAFHIAAKNGHLGKSLNDLKWILKVLMEFIPEISMTVDLTNTTALHTAAAQGHIEVVNFLLENGSSLVTIAKSNGKTVLHSAARNGHVEVVKAILNKEPEITVRMDKKGQTGLHMAVKGQNLELVDELVKLNSSLANMVDAKGNTALHIATRKGRLQVVQKLLDCKEIDTDVINKSGETALDAAEKNGRLEISNFLQHRGAQSAKSIKSPNTNTALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHTEGLNNAINYNTIVAVLIATVAFAAIFNVPGQYPEQQDKLSPGMSPGEVYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSFIIVGDHKELAIAATAIGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSLSMMSGSENEYKTVYAI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02595 561 Pfam Ankyrin repeats (many copies) 159 212 IPR002110 GO:0005515
Vimu6g02595 561 SUPERFAMILY Ankyrin repeat 46 319 IPR036770 -
Vimu6g02595 561 Gene3D - 22 131 IPR036770 -
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat profile. 260 282 IPR002110 GO:0005515
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat profile. 226 258 IPR002110 GO:0005515
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat region circular profile. 260 282 - -
Vimu6g02595 561 SMART ANK_2a 294 323 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 158 188 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 260 290 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 226 255 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 42 73 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 116 153 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 81 109 IPR002110 GO:0005515
Vimu6g02595 561 SMART ANK_2a 192 221 IPR002110 GO:0005515
Vimu6g02595 561 Gene3D - 132 345 IPR036770 -
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat profile. 192 224 IPR002110 GO:0005515
Vimu6g02595 561 Pfam Ankyrin repeats (3 copies) 231 319 IPR002110 GO:0005515
Vimu6g02595 561 Pfam Ankyrin repeats (3 copies) 39 105 IPR002110 GO:0005515
Vimu6g02595 561 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 36 544 - -
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat region circular profile. 192 222 - -
Vimu6g02595 561 ProSiteProfiles Ankyrin repeat region circular profile. 158 185 - -
Vimu6g02595 561 Pfam Domain of unknown function 374 489 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02595 Vimu-Chr6 22535714 22538275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02595 31 561 Miscellaneous Gene Families AT1G07710 61.397 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02595 - - gmx:100787392 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02595 6 22535714 22538275 Vimu6g02595 6 22535714 22538275 ECH