Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02587 ATGCCTCGCTATGATGATAAATACAATACACGCCTGTACGTGGGACGCCTGTCTCACAATACCCGTTCCCGTGATCTGGAGCGTGCTTTCAGCAGATATGGAAGGTTGCCGTCCGGCTGTCAACCTTGTTTTGTGCTGAAACTTGGTGATATGCAGGTTTCTGTGGTTTTCTCTAAACCTGGAGGTCTGTGTTGGGAGGTTGGCCTTGGTGGAATTGATGGAAATTCCTGTCGAGTGTTGACTTTGGCGATTCTTTCTTTAAGTAATGATGGCCTTACTGTTTCTGGAAACCATTTCCGCAGAGTTCGAGGTGTGGATATGAAGAACGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGATGATGCCAGATTTAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCTAAGGGGGGTCCTCGAGGTTCTCGTGAATACTTGGGTAGGGGTCCACCACCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCAGAGATTGCAAAGCTGGGGATTGGAAAAACAAATGCTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGTAAGAATAGTCCCAAAAAGTTGAGCAGGCGTGGGCGGAGTTTCTCACGATCACCAGTCAGGTCATATTCTCCTCGTCGTGGGAGAAGCAGGGATCGGAGCTACAGTCGTGACCGCAGCTACAGTCGATCGAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTCTCGGAAGATAGGTCACGGAGTCCTCGACCCTCCAAGATAAGGGATCATAGTGCATCACCTGACCGTGGCAGCCCACAGAAGAAAAGTGACATATCTCCCCGTAATGATGATAGGTTGGTCACACAGCGAGATGGGTCTGACTTCAGTGACGGTCCAAGAGGTAAAAGTAGAAGCCCTGCCAGCCCTCCAAGGAACAACAATGAGAGGGGGTATGATAGCCCCAAATCTAATGGTCGTAGCCGGAGCCCCAGCCGGAGCCCTAGGGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGTCGCTCACAGTCACCACCTTAG 1092 0.4991 MPRYDDKYNTRLYVGRLSHNTRSRDLERAFSRYGRLPSGCQPCFVLKLGDMQVSVVFSKPGGLCWEVGLGGIDGNSCRVLTLAILSLSNDGLTVSGNHFRRVRGVDMKNDFAFVEFSDPRDADDARFNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSFSRSPVRSYSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPRPSKIRDHSASPDRGSPQKKSDISPRNDDRLVTQRDGSDFSDGPRGKSRSPASPPRNNNERGYDSPKSNGRSRSPSRSPRDDRSPIDEDDDNHRRSQSPP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02587 363 Gene3D - 3 154 IPR012677 -
Vimu6g02587 363 SUPERFAMILY RNA-binding domain, RBD 5 36 IPR035979 GO:0003676
Vimu6g02587 363 SUPERFAMILY RNA-binding domain, RBD 99 165 IPR035979 GO:0003676
Vimu6g02587 363 SUPERFAMILY Retrovirus zinc finger-like domains 156 204 IPR036875 GO:0003676|GO:0008270
Vimu6g02587 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 146 IPR000504 GO:0003723
Vimu6g02587 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 139 IPR000504 GO:0003723
Vimu6g02587 363 SMART rrm1_1 11 142 IPR000504 GO:0003723
Vimu6g02587 363 Pfam Zinc knuckle 186 203 IPR001878 GO:0003676|GO:0008270
Vimu6g02587 363 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Vimu6g02587 363 Gene3D - 156 185 - -
Vimu6g02587 363 Gene3D - 186 215 - -
Vimu6g02587 363 FunFam Serine/arginine-rich splicing factor RS2Z32 185 232 - -
Vimu6g02587 363 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 10 274 - -
Vimu6g02587 363 MobiDBLite consensus disorder prediction 314 336 - -
Vimu6g02587 363 MobiDBLite consensus disorder prediction 337 363 - -
Vimu6g02587 363 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 156 184 - -
Vimu6g02587 363 MobiDBLite consensus disorder prediction 225 306 - -
Vimu6g02587 363 MobiDBLite consensus disorder prediction 199 363 - -
Vimu6g02587 363 ProSiteProfiles Zinc finger CCHC-type profile. 187 203 IPR001878 GO:0003676|GO:0008270
Vimu6g02587 363 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Vimu6g02587 363 SMART c2hcfinal6 187 203 IPR001878 GO:0003676|GO:0008270
Vimu6g02587 363 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02587 Vimu-Chr6 22460077 22462740 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02587 K12896 - gmx:100813237 389.423