Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02585 ATGCCTCGCCATGATGATAAATACAATACACGCCTGTACGTGGGACGCTTGTCCCACAATACCCGTTCCCGTGATCTGGAGCGTGCTTTCAGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGAACGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCGGATGATGCCAGATTTAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCTAAGGGGGGTCCTCGTGGTTCGCGTGAATACTTGGGTCGGGGTCCACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCAGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGCGGGGAAAGAGGTCATATAGAGAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGCAGGCGTGGACGGAGTTTCTCACGATCACCAGTCAGGTCATATTCTCCTCGTCGTGGGAGAAGCAGGGATCGGAGCTACAGTCGTGACCGCAGCTACAGTCGATCTAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCGACCTTCCAAGATAAGGGATCATAGTGCATCACCTGACCATGGCAGCCCACAGAAGAAAAGTGACATATCTCCCCGTAATGATGATAGGTTGGTCACAGAGCGAGATGGGTCTGACTTCAGTGATGGTCCAAGAGGTAAAAGTAGAAGCCCTGCCAGCCCTCCAAGGAACAACAATGAGAGGGGTTATGATAGCCCTAAATCTAATGGGCGTAGCCGGAGCCCTAGCCGGAGCCCTAGGGATGACAGGAGCCCCATTGATGAAGATGATGACAACCATCGTCGCTCACAGTCACCACCTTAG 894 0.5034 MPRHDDKYNTRLYVGRLSHNTRSRDLERAFSRYGRVRGVDMKNDFAFVEFSDPRDADDARFNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSFSRSPVRSYSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPRPSKIRDHSASPDHGSPQKKSDISPRNDDRLVTERDGSDFSDGPRGKSRSPASPPRNNNERGYDSPKSNGRSRSPSRSPRDDRSPIDEDDDNHRRSQSPP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02585 297 MobiDBLite consensus disorder prediction 159 240 - -
Vimu6g02585 297 FunFam Serine/arginine-rich splicing factor RS2Z32 119 166 - -
Vimu6g02585 297 SUPERFAMILY Retrovirus zinc finger-like domains 90 138 IPR036875 GO:0003676|GO:0008270
Vimu6g02585 297 Gene3D - 90 118 - -
Vimu6g02585 297 Gene3D - 119 149 - -
Vimu6g02585 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 10 193 - -
Vimu6g02585 297 MobiDBLite consensus disorder prediction 133 297 - -
Vimu6g02585 297 Pfam Zinc knuckle 120 137 IPR001878 GO:0003676|GO:0008270
Vimu6g02585 297 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Vimu6g02585 297 SMART rrm1_1 11 76 IPR000504 GO:0003723
Vimu6g02585 297 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Vimu6g02585 297 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vimu6g02585 297 ProSiteProfiles Zinc finger CCHC-type profile. 99 114 IPR001878 GO:0003676|GO:0008270
Vimu6g02585 297 ProSiteProfiles Zinc finger CCHC-type profile. 121 137 IPR001878 GO:0003676|GO:0008270
Vimu6g02585 297 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
Vimu6g02585 297 Gene3D - 3 88 IPR012677 -
Vimu6g02585 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 73 IPR000504 GO:0003723
Vimu6g02585 297 MobiDBLite consensus disorder prediction 271 297 - -
Vimu6g02585 297 MobiDBLite consensus disorder prediction 248 270 - -
Vimu6g02585 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 80 IPR000504 GO:0003723
Vimu6g02585 297 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 90 118 - -
Vimu6g02585 297 FunFam Serine/arginine-rich splicing factor RS2Z32 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02585 Vimu-Chr6 22453313 22455994 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02585 K12896 - gmx:100813237 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02585 6 22453313 22455994 Vimu6g02585 6 22453313 22455994 ECH