Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02570 ATGAGAGATTTCGTGATCCTTGGCTCCTCTGTCACAACCCCTTTTCCTTCTTCTTCTTCTGCAGCACCCTATCGCTTCTCCATTAAACACTCTATTCCAAAGTTCGCTCCTTTCTATTCCTCTTGGAACATTTCATGCGCCCTCCAAGCCCCCCTCTCTCTCAGCGCCGATTCCAAGCTCGTTGAAGAATTTGAAGTGTTCGATGAGGATGCCATTGATTCTGGGGTCGATGCTGAAGTTCTGGCCAAGATGGTTCTGATGGGAATTCGAGGGAACAAGGTAAGGAGTGTTGTTCACACTCTCAACAGAGTGCAGGATCGCGCAGTTTCTCTAGCTTCTCATCTTAATGGCTCTTCGATTGATGCCATTGCGAAGGAGTGTTGCCGTTTGGTCACGTGCGGCCAAATTGAGGAGGCTGTTGAACTAATGGAGATTCTCACACGTTTCAAGATATCAATCAGGGGACTTGTTCAGCCATCTGACGTAATTAAACGCTGTGTTCTTAGTCGGAACCCAATTTTAGCTGTTAGGTATGCATGTCTTCTTCCCCATGCACAGATATTGTTCTGCAGTATTATATCAGAATTTGGCAAAAGGAGGGATTTGATTTCTGCTTTGAAAACATATGAGCTATCGAAGAAACATGTGGATACTCCCAATATGTACATATACCGGGCAATAATTGATGCTTGTGGTCTATGTCGTGATTACATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATCACTCCAAATATATACGTTTTCAACAGCCTCATGAATGTGAATGCTCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGAATCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCAAGACATCTATAGGGAACTTAAGCATTTGGAATCAGTGGGACAGCTAAAATTAGATGTCTTTACCTACAGTACAATTATAAAGGTCTTCGCAGATGCGAGGTTATGGCAGATGGCTCTAACAATCAAGCAAGACATGCTTTCTGCTGGTGTTTCTCTAAATATTGTCGCATGGTCATCATTAATCAATGCCTGTGCACATACAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGCGAGCCTAATACTCAGTGTTTCAACATAATTTTAAATGCCTGTGTTGAAGCTTGCCAATATGACAGGGCTTTTCGCTTTTTCAATTCTTGGAAGGGAAATAAGATGTCAAGGTCATTTGGTGAAGACTGCCACAACAATATAGGGCAGGGACTTGTGCATAATGTTACTACTATGCCAAATGGCATTTCTAATTCACACATCTTGAATTTTGCTGAGAGGTTCCCTTTCACACCAACTACAACAACATACAATATTTTACTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGCCTTTCCCCTAATCAAATTAGCTGGTCAATTTTGATAGATATCTGTGGAGCATCAGCAAACGTGGAGGGTGCCATTGAGTTCTCTGATGAGATGACCATGTTTTCCATGCAGATTTTGAAAAACATGGCTGATGCTGGAATTAAACCTGATGTTATTGCATATACGACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAGCATTATATGAAGAAATGAAAAGCTACCAGATACGACCAAATTTGATAACATACAACACACTTCTGAAGGCCCGCAGTAAATATGGCTCCCTACATGAGGTTCAACAATGCTTGGCTATATACCAGGATATGCGAAAGGCAGGGTATAAACCCAATGACTGCTATCTGGAAGAATTGATTGAGGAATGGTGTGAAGGAGTGATACAAGATAACAGAGAGATGCAAGGAGAATTTTCTTTCAGCAATAAATCTGAATTAGAGAGATCCCAAAGTCTACTTCTTGAAAAAATTGCTGCTCACCTGCTAAAGAGGGTAGCTGACATCCTATCAATTGATGTTCAAGGTCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGGATGATCAAAGAGAATTACAGTTTAGGACATTCAATAAATGATGATATCTTGATCGTCATAGGAGCTACTAAAGTAGACGAAAATCCAAATAAACGCATATTAGAAGTGCAAGAGGCAATAATAAAACTTCTTAGAAACGAATTGGGTCTGGAAGTTTTTTCTGCCAGAACTAGATTAGCACTAAGTGACACACCAAAGTTAAAGCACCCCAACTTTGCAAATCTCAAAATAGGAGCACTACCAGGAGAGGATGCATTACCCATATTAACGGGGTTTCAGACCAGAAGACCTGCAATTCTAGTGAGGTTGAAGGTCACCAGAAAATCATTATACAGCTGGTTGCACAGGAAGTAA 2463 0.404 MRDFVILGSSVTTPFPSSSSAAPYRFSIKHSIPKFAPFYSSWNISCALQAPLSLSADSKLVEEFEVFDEDAIDSGVDAEVLAKMVLMGIRGNKVRSVVHTLNRVQDRAVSLASHLNGSSIDAIAKECCRLVTCGQIEEAVELMEILTRFKISIRGLVQPSDVIKRCVLSRNPILAVRYACLLPHAQILFCSIISEFGKRRDLISALKTYELSKKHVDTPNMYIYRAIIDACGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADARLWQMALTIKQDMLSAGVSLNIVAWSSLINACAHTGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEACQYDRAFRFFNSWKGNKMSRSFGEDCHNNIGQGLVHNVTTMPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASANVEGAIEFSDEMTMFSMQILKNMADAGIKPDVIAYTTAIKVCVESKNFMQALALYEEMKSYQIRPNLITYNTLLKARSKYGSLHEVQQCLAIYQDMRKAGYKPNDCYLEELIEEWCEGVIQDNREMQGEFSFSNKSELERSQSLLLEKIAAHLLKRVADILSIDVQGLTKVEARLVVLAVLRMIKENYSLGHSINDDILIVIGATKVDENPNKRILEVQEAIIKLLRNELGLEVFSARTRLALSDTPKLKHPNFANLKIGALPGEDALPILTGFQTRRPAILVRLKVTRKSLYSWLHRK 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02570 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Vimu6g02570 820 Pfam Pentatricopeptide repeat domain 540 597 IPR002885 -
Vimu6g02570 820 Gene3D Tetratricopeptide repeat domain 537 670 IPR011990 GO:0005515
Vimu6g02570 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Vimu6g02570 820 Pfam PPR repeat 329 359 IPR002885 -
Vimu6g02570 820 Gene3D Tetratricopeptide repeat domain 185 319 IPR011990 GO:0005515
Vimu6g02570 820 Gene3D Tetratricopeptide repeat domain 320 453 IPR011990 GO:0005515
Vimu6g02570 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vimu6g02570 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vimu6g02570 820 Pfam Pentacotripeptide-repeat region of PRORP 196 315 IPR033443 -
Vimu6g02570 820 Pfam PPR repeat family 362 409 IPR002885 -
Vimu6g02570 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 624 IPR002885 -
Vimu6g02570 820 NCBIfam pentatricopeptide repeat 555 587 IPR002885 -
Vimu6g02570 820 NCBIfam pentatricopeptide repeat 291 316 IPR002885 -
Vimu6g02570 820 NCBIfam pentatricopeptide repeat 364 398 IPR002885 -
Vimu6g02570 820 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Vimu6g02570 820 NCBIfam pentatricopeptide repeat 400 429 IPR002885 -
Vimu6g02570 820 Gene3D Tetratricopeptide repeat domain 458 536 IPR011990 GO:0005515
Vimu6g02570 820 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 470 626 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02570 223 637 Glycosyltransferase AT1G05670 20.614 1.16e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02570 - - gmx:100794606 1328.15