Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02553 ATGGGTTCACTAGAAAGATCAAAGAAGAAGGTTCTTCTATGGAAGAAGGCCATGCTCCATTTTTCCTTGTGTTTTGTGATGGGCTTTTTCACTGGTTTAGCTCCAACAGGTAAATCTTCTCTCTTTTCCACCAAAGTTGCTGTTTCAAATAGGACACAGTTTGCTCCACAACCTAGTGAAATGTCACTCCTCACAAATAGTGTCAATGAAAGTTTCATAGCTCCACCTCCAATCACCATGTCCATGAAGCCTGCAATCCCTGAAACTGAAAAGAAAAAAACACTACCAAAGTTGAAGCCCAGAAGACTCATCATCATTGTGACTCCAACAAGCACAAAACTACCCCACCAAGCAGTGTTTTTGAGAAGGTTGGCAAATACCATAAAGCTTGTTCCTCAACCATTGCTGTGGATTGTTGTGGAAGCAAAAACAAATTCCACAGAGCTTCCTGAAATACTGAGAAAAACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAAAACTTCACTGAATTAGAAGCTGAACTGAATCACCAGAGAAATCTTGCACTCAAGCACATTGAGCACCACAGACTCAACGGCATTGTGCACTTTGCTGGCCTTTCCAATGTCTATGATCTCCAATTCTTCCATCAGCTTAGAGATATTGAGTATGATTAA 660 0.4091 MGSLERSKKKVLLWKKAMLHFSLCFVMGFFTGLAPTGKSSLFSTKVAVSNRTQFAPQPSEMSLLTNSVNESFIAPPPITMSMKPAIPETEKKKTLPKLKPRRLIIIVTPTSTKLPHQAVFLRRLANTIKLVPQPLLWIVVEAKTNSTELPEILRKTGIMYRHVVFKENFTELEAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFHQLRDIEYD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02553 219 SUPERFAMILY Nucleotide-diphospho-sugar transferases 102 217 IPR029044 -
Vimu6g02553 219 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 13 217 IPR005027 GO:0015018|GO:0016020
Vimu6g02553 219 Pfam Glycosyltransferase family 43 124 217 IPR005027 GO:0015018|GO:0016020
Vimu6g02553 219 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 102 218 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02553 Vimu-Chr6 22215401 22216060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02553 1 217 Glycosyltransferase AT2G37090 54.506 1.47e-79 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02553 K20869 - gmx:100785607 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02553 6 22215401 22216060 Vimu6g02553 6 22215401 22216060 ECH