Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02530 ATGCACCCTCTCCTTCATGTATATATTACAACACCACATCTCTTCCTTCCACTTGTAACAAAAATCTTAGTCTTCTTCTTAGCTTTTTTCCTCACTCCAATGGCAAAGCTTTTCCATTTCCTCCTTCTTCTCTTCATCCAAACAATTTCAGCCCAAGTAGCACCGACACCAGCAGGACCCACCAACATCACCCAGGTGCTAGAGAAAGCAGGGCAATTCACAACTTTCATCAAACTTCTCAAAGCCACACAAACAGCTGACAGACTCAACTCACAGCTCAACAACTCAAACCAAGGCCTAACCTTGTTTGCACCCACTGACAATGCATTCTCAAGCCTAAAAGCAGGAACACTAAACTCCATTAACTCACAAGACCAAATGCAGTTGGTGCAGTTCCACATCCTCCCCACTCTCTACTCCATCTCACAGTTCCAAACCGCCAGCAACCCTTTACACACACAAGCCGGGAACAGCGACGACGGAGAGTACCCTCTCAACGTGACCACCTCCGGGAACCAAGTGAATCTAACAACTGGGGTGGTTGACACAACAGTGTCCAACACTATATTCAGTGATAACCAGCTCGCGGTGTATCAGGTCGATAAGGTGCTTCTTCCTATGGCACTTTTTGGATCGACGGCTCCGGCGGCAGCACCGGCGGAGGCTCCCGCGCCTACCAAGCCGGAGAAGAATGTCCGAGCAGGGGCAGCTGATTCTCCATCAGGGTCTTCGGACTCGTCGGCTGATGCTTCGAGTGCGGTGAGTTTGAAAAGGAAGACAGTTGAAGTTGTTACCTTTGTTTTTGCAGTTATTGCCGTTTCTTGTTTCTGA 831 0.4874 MHPLLHVYITTPHLFLPLVTKILVFFLAFFLTPMAKLFHFLLLLFIQTISAQVAPTPAGPTNITQVLEKAGQFTTFIKLLKATQTADRLNSQLNNSNQGLTLFAPTDNAFSSLKAGTLNSINSQDQMQLVQFHILPTLYSISQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNLTTGVVDTTVSNTIFSDNQLAVYQVDKVLLPMALFGSTAPAAAPAEAPAPTKPEKNVRAGAADSPSGSSDSSADASSAVSLKRKTVEVVTFVFAVIAVSCF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02530 276 ProSiteProfiles FAS1/BIgH3 domain profile. 60 204 IPR000782 -
Vimu6g02530 276 FunFam Fasciclin-like arabinogalactan protein 11 43 206 - -
Vimu6g02530 276 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 37 264 IPR045003 -
Vimu6g02530 276 MobiDBLite consensus disorder prediction 217 250 - -
Vimu6g02530 276 Gene3D FAS1 domain 46 207 IPR036378 -
Vimu6g02530 276 Pfam Fasciclin domain 72 206 IPR000782 -
Vimu6g02530 276 SUPERFAMILY FAS1 domain 59 206 IPR036378 -
Vimu6g02530 276 SMART fasc_3 101 207 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02530 Vimu-Chr6 22052865 22054388 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02530 - - pvu:PHAVU_001G176400g 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02530 6 22052865 22054388 Vimu6g02530 6 22052865 22054388 ECH