Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02529 TTGCGATGTGATGATCGTTCACACGTGACGCTACACGGCACGAAGATGAACACATCCAACGGCATCATGACACAGTCGTCTTCGTCGGGAGCGACACAGTCGCCGGGGCTCAAAACCTATTTCAAAACTCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGAAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCACCGTCTACACCAACTGCGTCGTCCTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCTGCGGCAGCTAGATTATTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTAGTAGCAAGAATAATGGAGGGAACAGTAGGATTGGTTCCATTGGAACCTCCAGTACAAGTAGTTCAATGGCTAATCCAAATTTTGATGGGAAAGGCACGTACCTGATATTCAACGTCGGTGATGCAATTTTCATTAGCGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCAGTGTGCCATGCGTTTGATCAGGATTCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAGAAGCTTGTTGGGGCCCTGCATTACAACAAAGACGGTTCAGTCAATAACAGGCAAGATATGATCATCCTAATCCTTTTGCTGTTTGATACAACCATGATCCCAAGGCTCAGTCATTTCTTGGTGAACTCAGAGGTGAGATCGCTTAAAATTCCAAGTTCATATGAGCGTTGTTGTTCTGCCGCTGCTAGATATTTTTCTGCATTTTTGGTAGTTGCTTCATTGCTGATGCTGGTAGCTGTTTCATTGTTGCTTGATCTTCGTTGTACATGCATTGCTTGGGTGCCTGGAGGTGATGGCGCTTTTGTTGTTTCTCATTCTGATGGTAATTTATACGTGTATGAGAAGAACAAAGATGGTGCGGGTGATTCTTCTTTTCCAGTTGTAAAAGATCAAACTCAATTTTCTGTTGCCCATGCACGTTACAGTAAGAGTAATCCGATAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAATGGATGGAGCATACTTGGCAACTGTTGGACGAGATGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACAACTTATCTGTGGCGGGAAAAGTTATTACGGTGCTTTGTTATGCTGTGCGTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGGAAGGTTGTGGCATGGGGTGAGGGACATGGCTCGTGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACCGTTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTAGAAATGGACGAAATCGTGGTGCCATTGAGGCGGCCAGCTGGTGGATCTCCAACTTACAGTACTGGAAGCCAGTCATCACACTGGGACAATGTGGTCCCATTGGGTACCTTGCAACCTGCTCCGAGTATGCGTGATGTTCCAAAAATATCTCCGTTGGTTGCTCACCGTGTGCATACCGAACCACTCTCTGGCTTGATATTTACCCAAGAATCTGTGCTCACTGCCTGTCGGGAAGGTCACATTAAAGTCTGGATGAGGCCAGGGGTTGCTGCTGACACCCAATCAACCAACTCTGAAAACTTGTTAGCCACCTCTCTCAAAGACAACAAGCCTTCACTCTCAACCAAGATCACCAATTCTCCCTACAAACAATGA 1896 0.4568 MRCDDRSHVTLHGTKMNTSNGIMTQSSSSGATQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKNNGGNSRIGSIGTSSTSSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGALHYNKDGSVNNRQDMIILILLLFDTTMIPRLSHFLVNSEVRSLKIPSSYERCCSAAARYFSAFLVVASLLMLVAVSLLLDLRCTCIAWVPGGDGAFVVSHSDGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHGSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPAGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGVAADTQSTNSENLLATSLKDNKPSLSTKITNSPYKQ 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02529 631 SMART WD40_4 555 592 IPR001680 GO:0005515
Vimu6g02529 631 SMART WD40_4 306 341 IPR001680 GO:0005515
Vimu6g02529 631 SMART WD40_4 412 451 IPR001680 GO:0005515
Vimu6g02529 631 SMART WD40_4 454 506 IPR001680 GO:0005515
Vimu6g02529 631 SMART WD40_4 370 409 IPR001680 GO:0005515
Vimu6g02529 631 PANTHER WD REPEAT PROTEIN 26 609 - -
Vimu6g02529 631 SUPERFAMILY WD40 repeat-like 164 591 IPR036322 GO:0005515
Vimu6g02529 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 460 IPR001680 GO:0005515
Vimu6g02529 631 MobiDBLite consensus disorder prediction 12 39 - -
Vimu6g02529 631 MobiDBLite consensus disorder prediction 120 146 - -
Vimu6g02529 631 MobiDBLite consensus disorder prediction 612 631 - -
Vimu6g02529 631 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g02529 631 Gene3D - 26 601 IPR015943 GO:0005515
Vimu6g02529 631 Pfam WD domain, G-beta repeat 381 409 IPR001680 GO:0005515
Vimu6g02529 631 Pfam WD domain, G-beta repeat 426 451 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02529 386 513 Miscellaneous Gene Families AT5G08390 22.656 8.31e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02529 K24741 - gmx:100782580 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02529 6 22040155 22045418 Vimu6g02529 6 22040155 22045418 ECH