Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02520 ATGGCAGGCTCACACCTTCTTTCACACTCTCATTCCCTTCCCAAAACCTATAACCACTCCTTTAACCAAAACCCTTTATCTCAAAAGCTACTTCTACCCCTCAAATTCAAGGCCACCCTCAGACCGCGTGCTCTTAGAGCTGTTCTCTCCCAGAAAGCTGCTCAAACCGCGGTAGAGGACTCAAAGAAGGCTCCTTTTCAGCACTGTTTCACCAAATCCGAAGATGGGTATCTGTACTGTGAGGGCCTCAAGGTACATGACATCATGGAATCTGTTGAGAGAAGGCCTTTCTATCTTTACAGCAAGCCCCAGATAACTAGGAATGTTGAAGCCTATAGGAATGCATTGGAAGGGTTGAACTCTATAATTGGGTATGCCATTAAGGCCAACAATAACTTGAAGATTCTGGAACATTTGAGGCACTTGGGCTGTGGAGCTGTGCTTGTTAGTGGGAATGAGCTTAGATTGGCTCTTCGTGCTGGCTTTGATCCCACAAGGTGTATCTTTAATGGGAATGGTAAAATCTTGGAGGACTTGGTCTTGGCTGCCCAGGCAGGTGTGTTTGTCAACATTGATAGTGAGTTTGACTTGGAGAACATTGTAGAGGCTGCAAAAAGGGCTGGAAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTAGATCCACAGGTCCATCCTTATGTTGCTACTGGGAATAAGAACTCTAAATTTGGCATTAGAAATGAGAAGCTGCAATGGTTCTTAGATGCAGTGAAGGACCATCCTAATGAGCTCAAACTTGTAGGGGCCCACTGCCATCTCGGTTCAACAATCACCAAGGTAGACATTTTCAGGGATGCTGCCACCATTATGATCAACTACATTGATCAAATCCGAGCTCAGGGTTTTGAAGTTGATTATTTAAATATTGGAGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCATCCTTCCTTCACCTAGAGATCTCATTGACACTGTACGAGATCTTGTTATTTCCCGAGGTCTTAATCTCATCATTGAACCAGGGAGATCACTCATTGCTAACACATGTTGCTTAGTTAACCGGGTGACAGGAGTTAAAACTAATGGATCTAAAAACTTCATTGTAATTGATGGAAGTATGGCAGAACTTATCCGCCCTAGTCTCTATGATGCCTACCAGCATATAGAGTTGGTTTCCCCTGCCCCATCAAATGCTGACAAAGCAACCTTTGACGTGGTTGGCCCAGTCTGCGAGTCTGCAGATTTCTTAGGAAAAGAAAGAGAACTTCCTACTCCAGCCAAGGGTACTGGTTTGGTCGTTCATGATGCTGGCGCTTATTGCATGAGCATGGCATCAACATACAATCTAAAGATGCGGCCTCCTGAGTATTGGGTATGGAGTTACTTTTCTCCACTTGCTAACTTCTTTGAGCAGGCTTAG 1431 0.4423 MAGSHLLSHSHSLPKTYNHSFNQNPLSQKLLLPLKFKATLRPRALRAVLSQKAAQTAVEDSKKAPFQHCFTKSEDGYLYCEGLKVHDIMESVERRPFYLYSKPQITRNVEAYRNALEGLNSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKILEDLVLAAQAGVFVNIDSEFDLENIVEAAKRAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKDHPNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRAQGFEVDYLNIGGGLGIDYYHSGAILPSPRDLIDTVRDLVISRGLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPSNADKATFDVVGPVCESADFLGKERELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVWSYFSPLANFFEQA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02520 476 SUPERFAMILY PLP-binding barrel 95 351 IPR029066 -
Vimu6g02520 476 FunFam Diaminopimelate decarboxylase 102 347 - -
Vimu6g02520 476 CDD PLPDE_III_DapDC 96 462 IPR002986 GO:0008836|GO:0009089
Vimu6g02520 476 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 125 143 IPR022653 -
Vimu6g02520 476 NCBIfam diaminopimelate decarboxylase 72 459 IPR002986 GO:0008836|GO:0009089
Vimu6g02520 476 Gene3D Alanine racemase 102 347 IPR029066 -
Vimu6g02520 476 PRINTS Diaminopimelate decarboxylase signature 143 160 IPR002986 GO:0008836|GO:0009089
Vimu6g02520 476 PRINTS Diaminopimelate decarboxylase signature 231 240 IPR002986 GO:0008836|GO:0009089
Vimu6g02520 476 PRINTS Diaminopimelate decarboxylase signature 368 386 IPR002986 GO:0008836|GO:0009089
Vimu6g02520 476 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 294 309 IPR022657 -
Vimu6g02520 476 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 340 359 IPR000183 GO:0003824
Vimu6g02520 476 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 258 271 IPR000183 GO:0003824
Vimu6g02520 476 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 145 157 IPR000183 GO:0003824
Vimu6g02520 476 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 143 IPR000183 GO:0003824
Vimu6g02520 476 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 441 454 IPR000183 GO:0003824
Vimu6g02520 476 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 85 462 IPR009006 GO:0003824
Vimu6g02520 476 PANTHER DIAMINOPIMELATE DECARBOXYLASE 67 462 - -
Vimu6g02520 476 FunFam Diaminopimelate decarboxylase 332 466 - -
Vimu6g02520 476 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 104 350 IPR022644 GO:0003824
Vimu6g02520 476 SUPERFAMILY Alanine racemase C-terminal domain-like 326 463 IPR009006 GO:0003824
Vimu6g02520 476 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 351 441 IPR022643 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02520 Vimu-Chr6 21963513 21967415 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02520 K01586 - gmx:100786832 859.366