Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02511 ATGGCTGTTGGGTTCCCATTACTATGGAGGAGGTCAAATGAAGATCAAGGTGATGAAGATGAGCTGCAAAATCTAGCTTCCACAATTGAGGACAAGGTTGATTTTTACATGGGTGTACTGTTATGGTATAAGGAGAAGAAAAAGACTTGTTATGGAGCCATTGAACACCAAAGGGGATATTATTTTGGATGTGATGACCCCAATGATGTCTACGGGTTTGAGGTCAAAACATTGATGCTAGAAGGGCAGTCAGTACCACTCTTGTCCTTTAACCTTGATTGTTGTGGGGATTGTTCTAGTATACTTAAAAGTCCCATATCGTGTGCCTCAATTCCTGGAGATGGAGGGGATGTCCGTTCTGGGTGCATTGAGGGATTGGCTGAAGAGTATCAAAATAATGCACAAGCAAATCTTCATATCAAAAATAAAAAAGGTGGCAAGGAAGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTGTACCATCCCTATTGTGTGGATCCTCCTCTCAAGTACATTCCTTTGAGGCTTTGGCATTGTATCTGGTGCACTAAGAAAAAAATAGAGTTTGGCGTGCATTCTGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAATAATAAAGTAAGTAGCATGTTGCTAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGTCTTGCTCATGCTCACAACCGCTGGATTACAGAATCAACAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAAAGTGAACCGAAGGTTAGCAGGTGGAAAAGTGATTGGAGTATACCTCACCGCTTACTCCTTAAAAGAGAAATTGTGCATTTTGGTGGGCATGGTGACAATGACTCAATTTGCTGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAATGCCACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCGAAAGGCAGGAAACTCATTCGTGATTATGAAAGTCGTCGAAAGGGAGTTGATAAACTGTCAAAAAGTCATTTTGAAGACAATGAGACAATGAGTGGGCTTCCTCAGTCTCTATTCCATGAAGCTACCAAGACACGATGGGAAAAAGTATACGTCAGAAAAAAGAATCCAAGGGCTGAGATGGGATTTTGGTTGAGGGAGGAGAGGAACTGCTTTTGTGTTGCTCTAGAAAGGAGCGTAGCTCTGGATCGCTTTTTGCTGGTGAATGCCACCAAAGAGAAAGGGCAGGTGAAAACAGGGGAACTGAAAAATACAGTAGCCATGGATGCTAGGATGGAGCTTAGCTGTCATGGAGGAGATATGATTCTAAGCAATTCAAAACCAATCAACGATCAAGACAATGCAAACCAATTGAAGTTAGTGGAATTGATGATTTGTAGCTGGGAGAAAATCCCTCATGTGGACGGAGAGAACTCTATTAGGCCTAAGATGGAGTCATCTAGTGGTGGAAGTGGCTTGAAGTCCTTAGAAGGAGAGGCGTTGGATTGCCTCAAACTCTTAATTGGAGCTTCGCATAACTTTATTTCGAGAAGATTGGTCGAGGCAATAGGTTGGCAGTGGGAGACCAATAAGAATGGGCACAGGTCAAAAACGTTGGGAGTGTGTTGCAAAATTAAAATTGAAATAAAAGGTTGTGATTTTATGGTAGATGCCTATTTGTTTGACTTAGAGGACATTAATATGATTTGGGCATGTCATGGTTTGTTTCTTTGGGCGAAATGGTTGTTGATTGGAGAAAACAAACCATGA 1779 0.4165 MAVGFPLLWRRSNEDQGDEDELQNLASTIEDKVDFYMGVLLWYKEKKKTCYGAIEHQRGYYFGCDDPNDVYGFEVKTLMLEGQSVPLLSFNLDCCGDCSSILKSPISCASIPGDGGDVRSGCIEGLAEEYQNNAQANLHIKNKKGGKEVVCSNCLGGGVLLYHPYCVDPPLKYIPLRLWHCIWCTKKKIEFGVHSVSEGVKSILDSREVVSNNKVSSMLLVMQREYFVKYQGLAHAHNRWITESTMLLEAPKLLAKFKSEPKVSRWKSDWSIPHRLLLKREIVHFGGHGDNDSICCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIRDYESRRKGVDKLSKSHFEDNETMSGLPQSLFHEATKTRWEKVYVRKKNPRAEMGFWLREERNCFCVALERSVALDRFLLVNATKEKGQVKTGELKNTVAMDARMELSCHGGDMILSNSKPINDQDNANQLKLVELMICSWEKIPHVDGENSIRPKMESSSGGSGLKSLEGEALDCLKLLIGASHNFISRRLVEAIGWQWETNKNGHRSKTLGVCCKIKIEIKGCDFMVDAYLFDLEDINMIWACHGLFLWAKWLLIGENKP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02511 592 CDD retropepsin_like 507 585 - -
Vimu6g02511 592 Gene3D - 199 261 - -
Vimu6g02511 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 192 IPR013083 -
Vimu6g02511 592 SUPERFAMILY Chromo domain-like 162 258 IPR016197 -
Vimu6g02511 592 Gene3D - 263 336 - -
Vimu6g02511 592 SMART chromo_7 197 262 IPR000953 -
Vimu6g02511 592 SMART chromo_7 269 338 IPR000953 -
Vimu6g02511 592 Pfam Chromo (CHRromatin Organisation MOdifier) domain 200 259 IPR023780 -
Vimu6g02511 592 ProSiteProfiles Chromo and chromo shadow domain profile. 198 269 IPR000953 -
Vimu6g02511 592 SUPERFAMILY Chromo domain-like 267 336 IPR016197 -
Vimu6g02511 592 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 200 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02511 Vimu-Chr6 21837790 21844427 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02511 - K11643 gmx:100813574 247.284