Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02510 ATGGCGTCCGAAGGCATTCTTCTCGGCATGGGAAACCCTCTCCTGGACATCTCCGCCATCGTTGACCCTGAGTTCTTGAAAAAGTACTCTCTCACCTTGAACAATGCCATTCTTGCGCATGACAAGCACAAACCTATATATGAAGAGTTGGTTGAGAAATATGACGTGGAGTACATTGCTGGAGGTTCTACTCAGAATTCAATCAAGGTTGCTCAGTGGATGCTCCAAGTTCCGGGTGCAACAAGTTTCATGGGTGGCATTGGAAAGGATAAGTTTGGCGAAGAGATGAAGAAGAGCACAAAGCTTGCTGGTGTAAAAGTTCACTATCATGAAGATGAATCGACACCTACTGGAACTTGTGCTGTTTGTATAATTGGTGGCGAAAGGTCGCTTGTTGCAAACTTAGCAGCTGCAAATTGCTATAGGTCTGGGCATTTGAAGAAACCAGAAAATTGGGCACTAGTTGAAAAGGCTAAATATATTTATATTGCTGGATTTTTCCTCACTGTATCACCAGATTCTATCCTGTTAGTTGCTGAGCATGCTGCTGCAAATAACAAGATCTTCTCGATGAACCTTTCTGCCCCTTTCATCTGTGAGATATTCAGGGAGAGACTGGAGAAAGCTCTACCGTATACAGATTTTGTTTTTGGAAATGAGACTGAAGCAAAAATATTTTCTAAAATTCAAGGCTGGGAGACTGAAAATGTCGAGGAGATAGCTCTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACGCACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCCGTATGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCCCGTGGAACTTTTGCCTAAAGAGAAACTAGTTGATACAAACGGAGCAGGAGATGCATTTGTTGGAGGATTTCTTTCACAATTGGTCCAGGAGAAGCCCATTGAAGAATGTGTGAGAGGTGGCTGTTATGCAGCAAACGTCATCATCCAAAGATCTGGCTGCACTTATCCAGAGAAGCCTAATTTCCATTGA 1026 0.4337 MASEGILLGMGNPLLDISAIVDPEFLKKYSLTLNNAILAHDKHKPIYEELVEKYDVEYIAGGSTQNSIKVAQWMLQVPGATSFMGGIGKDKFGEEMKKSTKLAGVKVHYHEDESTPTGTCAVCIIGGERSLVANLAAANCYRSGHLKKPENWALVEKAKYIYIAGFFLTVSPDSILLVAEHAAANNKIFSMNLSAPFICEIFRERLEKALPYTDFVFGNETEAKIFSKIQGWETENVEEIALKISQWPKASGTHKRITVITQGADPVCVAEDGKVKKFPVELLPKEKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRGGCYAANVIIQRSGCTYPEKPNFH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02510 341 SUPERFAMILY Ribokinase-like 8 334 IPR029056 -
Vimu6g02510 341 Gene3D - 15 134 - -
Vimu6g02510 341 PANTHER ADENOSINE KINASE 2 341 IPR001805 GO:0004001|GO:0006166
Vimu6g02510 341 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 290 303 IPR002173 GO:0016301
Vimu6g02510 341 FunFam Adenosine kinase a 15 65 - -
Vimu6g02510 341 Gene3D - 8 327 IPR029056 -
Vimu6g02510 341 Pfam pfkB family carbohydrate kinase 28 335 IPR011611 -
Vimu6g02510 341 CDD adenosine_kinase 4 335 - -
Vimu6g02510 341 PRINTS Adenosine kinase signature 83 97 IPR001805 GO:0004001|GO:0006166
Vimu6g02510 341 PRINTS Adenosine kinase signature 66 75 IPR001805 GO:0004001|GO:0006166
Vimu6g02510 341 PRINTS Adenosine kinase signature 152 178 IPR001805 GO:0004001|GO:0006166
Vimu6g02510 341 PRINTS Adenosine kinase signature 114 129 IPR001805 GO:0004001|GO:0006166
Vimu6g02510 341 PRINTS Adenosine kinase signature 261 280 IPR001805 GO:0004001|GO:0006166
Vimu6g02510 341 FunFam Adenosine kinase 2 54 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02510 Vimu-Chr6 21821112 21824544 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02510 K00856 - gmx:100810561 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02510 6 21821112 21824544 Vimu6g02510 6 21821112 21824544 ECH
Vimu6g02510 6 21821112 21824544 Vimu3g01228 3 21446999 21452214 PCT