Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02507 ATGAAGGGGAAGTTTCTGAGAGGTTGTCTTAACAAGTGGAAGAAAGTGGGGAGTCGAGTGATCCAGTGTGGTGCCTACGGTTACTGCTGCGAATGGGAAGTGTGGCCATGGATGCAGAATGAAGGAGAATCTGATATTCCGAACGATGTGCCAAAGGGTCATTTGGTTGTGTACGTGGGAGAACACCACAAGAGATATGTGATAAAGATCACCTTGCTCCATCATCCTCTCTTCAAGACCTTGCTGGATCAGGCTCAGGATGAGTACGATTTCATTGCAGACTCAAAGCTCTATATTCCTTGCACCGAGCATCTTTTCCTCACTGTCCTTCGCTGTGCAGCCTCTCCACATAATCAACGACTCTCTCTCTGCGTCTGA 378 0.4788 MKGKFLRGCLNKWKKVGSRVIQCGAYGYCCEWEVWPWMQNEGESDIPNDVPKGHLVVYVGEHHKRYVIKITLLHHPLFKTLLDQAQDEYDFIADSKLYIPCTEHLFLTVLRCAASPHNQRLSLCV 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02507 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 108 IPR003676 GO:0009733
Vimu6g02507 125 Pfam Auxin responsive protein 41 112 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02507 Vimu-Chr6 21812299 21812676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02507 44 120 Calmodulin-binding Proteins AT4G34750 43.210 8.12e-18 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02507 K14488 - gmx:100793017 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02507 6 21812299 21812676 Vimu6g02507 6 21812299 21812676 ECH
Vimu6g02507 6 21812299 21812676 Vimu3g01231 3 21478691 21479059 PCT