Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02496 ATGCCTCCAACGTCATTCTCGTGTTCGTTCTTCACCCTGCAACCACGCTTCAATTCCTACGTTAACCCTATTTTCCGTTCACTCAGCTTCCAACTCTCTTCTTCACCTCTCCCGTTCAATGCGCACTTCTCCAGCATTAGACTCCGCTCTTCGCTTTCTAGACCGGCGGAAACTGATTCTCCGACCGGCGGCAGGTCTGGAGCGTTAACTCCCGGCCCCTCTGTCGGGGCCGATGTTCAGAAAATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAAGACATGCGCTTGCGGAACTGGCTCTTCAACCATTTCAAAGAGGTTTCGCGATTGTATGGATTCGAAGAGGTCGATTATCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGAGAAGAGATTAAGGACCAGCTTTATTGTTTTGAAGATCGGGGAAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGACTGGTGATACAGAAAGGGAAGTCGGTACCATTACCGATTAAGTGGTTCACTGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGAGGCCGTCGTCGTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCTGGGGTTATGGCCGAAGCAGAGCTTTTATCTTCTATTGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTTGGATTTAAGGTTTCCAGTCGAAAGGTTCTACAGGAAGTATTAAATTGTTATTCAGTACCAGAACATTTATTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGTTGATGAAATAAAGAAAGAGTTGAAAGCTGTTGGTCTATCACAAGAGGCTGTCCAGAAGCTATTGCAAGTCCTTTCGGTGAAGTCATTGGAAGAGTTAGAAGAGAGACTTGGGAGCAGTGGGGAAGCAATTGCTGATCTGAAACAGCTATTCTCTCTTGCTGAAAAAATTGGTTTCTCAAAATGGCTTCAATTTGATGCGTCAGTTGTTCGAGGTCTTGCTTACTACACTGGTATTGTATTTGAGGCATATCAGCACTCCCATGCTCAGCCTCAGCTTTCCCATGCTCATCCTCAGGGTTTTGACCGAGAAGGAAAGCTGCGAGCAATTTGTGGTGGTGGTCGATATGATCATTTATTCTCAACTTTTGGTGCTGATGATATTGCTGCTTGTGGTTTTGGGTTTGGTGATGCAGTTATAGTGGAATTGCTCAAAGAGAAGGGTTTGTTACCAGAGCTTAACTTGAACGTAGATGACATCGTTTGCGCATTGGATGAAGATCTTCAAGGACGCGCTGCTATGGTTGCTAACATTCTCCGAGAAAAGGGGCATAGTGTTGAGTTGGTTTTGGAAAGCAAACAACTAAAATGGGTTTTTAAAAGAGCAGCCCGAGTAAATGCGGAGCGGCTTGTATTAGTGGGGAATTCAGAATGGCAAAGAGGCGTGGTTGGTGTCAAAATTCTCTCTACTGCTGAACAGTACGAGATTAAACTTGATGATCTCAAATAA 1557 0.4522 MPPTSFSCSFFTLQPRFNSYVNPIFRSLSFQLSSSPLPFNAHFSSIRLRSSLSRPAETDSPTGGRSGALTPGPSVGADVQKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDYPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVPLPIKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELLSSIVTLFKRIGITESDVGFKVSSRKVLQEVLNCYSVPEHLFGKVCVIIDKIEKIPVDEIKKELKAVGLSQEAVQKLLQVLSVKSLEELEERLGSSGEAIADLKQLFSLAEKIGFSKWLQFDASVVRGLAYYTGIVFEAYQHSHAQPQLSHAHPQGFDREGKLRAICGGGRYDHLFSTFGADDIAACGFGFGDAVIVELLKEKGLLPELNLNVDDIVCALDEDLQGRAAMVANILREKGHSVELVLESKQLKWVFKRAARVNAERLVLVGNSEWQRGVVGVKILSTAEQYEIKLDDLK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02496 518 CDD HisRS-like_core 97 421 IPR041715 -
Vimu6g02496 518 MobiDBLite consensus disorder prediction 54 93 - -
Vimu6g02496 518 Coils Coil 306 326 - -
Vimu6g02496 518 FunFam Histidine--tRNA ligase chloroplastic/mitochondrial 426 518 - -
Vimu6g02496 518 Pfam Anticodon binding domain 437 517 IPR004154 -
Vimu6g02496 518 Gene3D Bira Bifunctional Protein; Domain 2 80 424 IPR045864 -
Vimu6g02496 518 FunFam Histidine--tRNA ligase chloroplastic/mitochondrial 80 372 - -
Vimu6g02496 518 PANTHER HISTIDYL-TRNA SYNTHETASE 81 517 IPR004516 GO:0005737
Vimu6g02496 518 PIRSF His-tRNA_synth 80 518 IPR004516 GO:0005737
Vimu6g02496 518 SUPERFAMILY Class II aaRS and biotin synthetases 86 424 IPR045864 -
Vimu6g02496 518 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 427 IPR006195 -
Vimu6g02496 518 Hamap Histidine--tRNA ligase [hisS]. 82 518 IPR015807 GO:0004821|GO:0005524|GO:0006427
Vimu6g02496 518 Gene3D - 426 517 IPR036621 -
Vimu6g02496 518 SUPERFAMILY Class II aaRS ABD-related 433 517 - -
Vimu6g02496 518 Pfam Histidyl-tRNA synthetase 89 410 IPR041715 -
Vimu6g02496 518 NCBIfam histidine--tRNA ligase 86 513 IPR015807 GO:0004821|GO:0005524|GO:0006427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02496 K01892 - gmx:100793186 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02496 6 21709308 21722380 Vimu6g02496 6 21709308 21722380 ECH