Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02464 ATGGCAGCAACCTCAACATCACTGGCTTCTCAACTCTACATTGGCCTGCGCCGCCCCTGCCCCAAGCTCGATTCTTTCAATTCTCCGTCTTTTTCTGCCTTTGACCCTAATCTTCGTCTCTCCCTCTCTCCTCCCAAACCCTCACGCGCCGTTGTCGCCATGGCTGGCTCTGGCAAGAACGGAACAAAAGATTCCATCAGTAAGCTTGTCGCTGACTTGAACAGTGCAAAGTTGGAGCCCGATGTTGATGTCGTTGTTGCACCTCCCTTTCTGTACATCGATCAAGTGAAAAACTCACTTACAGACCGGATTGAAATATCTGCCCAGAATTCTTGGGTTGGTAAAGGTGGTGCTTTCACTGGAGAAATCAGATACTATTTCTTTTATGTTCCCAGTGTCCTTCATGCTGTTTTCGATGCAATTCCAATTGCTGAACAAGTTAAAGATATTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGTTTATAGGAAAGAAAGCTGCCTATGCTTTGAACCAGGGTCTTGGAGTGATTGCATGCATAGGAGAATTGTTAGAAGAAAGGGAAGCAGGGAGAACTTTTGATGTTTGCTTTCAACAATTGAAGGCTTATGCTGATGCTGTTCCTAGTTGGGACAATATTGTTATTGCGTATGAACCTGTATGGGCCATTGGAACTGGCAAAGTGGCCACTCCCCAGCAGGCTCAGGAAGTACATGTAGCTCTTCGGGATTGGCTGAAAAAGAATGTCTCAGAGGAAGTTGCATCTAAAACTCGAATTATATATGGAGGGTCTGTAAATGGAGGGAACAGTGCTGAGCTGGCAAAGCAAGAAGATATCGATGGATTTCTCGTTGGAGGTGCTTCATTGAAGGGTCCTGAGTTTGCTACCATTGTGAATTCAGTCACATCCAAGAAAGTTGCGGCTTGA 960 0.4521 MAATSTSLASQLYIGLRRPCPKLDSFNSPSFSAFDPNLRLSLSPPKPSRAVVAMAGSGKNGTKDSISKLVADLNSAKLEPDVDVVVAPPFLYIDQVKNSLTDRIEISAQNSWVGKGGAFTGEIRYYFFYVPSVLHAVFDAIPIAEQVKDIGCKWVVLGHSERRHIIGENDEFIGKKAAYALNQGLGVIACIGELLEEREAGRTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHVALRDWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02464 319 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 51 311 IPR000652 GO:0004807
Vimu6g02464 319 SUPERFAMILY Triosephosphate isomerase (TIM) 60 312 IPR035990 GO:0004807
Vimu6g02464 319 PANTHER TRIOSEPHOSPHATE ISOMERASE 60 311 IPR000652 GO:0004807
Vimu6g02464 319 NCBIfam triose-phosphate isomerase 144 301 IPR000652 GO:0004807
Vimu6g02464 319 Hamap Triosephosphate isomerase [tpiA]. 58 311 IPR022896 GO:0004807|GO:0006096
Vimu6g02464 319 Gene3D Aldolase class I 45 318 IPR013785 -
Vimu6g02464 319 ProSitePatterns Triosephosphate isomerase active site. 227 237 IPR020861 GO:0004807
Vimu6g02464 319 Pfam Triosephosphate isomerase 60 124 IPR000652 GO:0004807
Vimu6g02464 319 Pfam Triosephosphate isomerase 144 311 IPR000652 GO:0004807
Vimu6g02464 319 CDD TIM 60 310 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02464 Vimu-Chr6 21454613 21459191 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02464 K01803 - gmx:100819824 551.206