Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02459 ATGGTGAAGGCCTACCTCCGATTCGAGCCGGCGGCGTCGTTTGGAGTGATAGCCTCGGTGGATTCCAACATATCATACGACAGTTCCGGCAAGCACCTCCTCTCTCCGGCACTCGAGAAGATAGGCGTTTGGAACGTGCGGCAGGGCCTCTGCACCAAAACCCTAACACCTTCCACTGCGTCGCGTGGTCCTTCCCTTGCCGTCACCTCCATTGCATCCTCTCCTTCCTCATTGATTGCTGGTGGTTACGGGGATGGTAGCATACGGATTTGGGACTCTGATAAAGGAGCGTGTGAAACTACGCTAAATGGTCACAAGGGAGCTGTCACCGCTCTTCGTTACAACAAGGCTGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTATGGGACGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGTGGTCATCGTGACCAGGTGACTGATGTTGTTTTTTTGAATTCTGGGAAAAAACTAGTGAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTGGGTGGACATCATAGTGAAATATGGTCCCTGGATGTTGATCTGGATGAGAGGTATCTGGTCACTGGTTCTGCAGATAGTGAACTTCATTTTTATGTAATCAGAGATGAGTCTGTGGATGGGAACTCTTTAAATGGTGGTGAAGAATCCTCCATTCAAAGCAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGACAAAGTAGGGATAGGGTTGCAACTGTGCAGTTCAACAAGTCTGGAAACCTGCTAGCTTGCCAAGTTGCCGGTAAAACTGTAGAAATATACCGTGTATTGGATGATGCTGAAGCAAAGCGCAAGGCAAAGCGAAGGGTTCACCGAAAGAAAGAGAAGAAACACAGTAAAGAGACTTTGGACGGAGTAGAAAATGGAGACGGGAATAATGCTAACAAAGGAGATAACTCTTCTGTCACTCATGTGCCCACAGAAACAACTAACCCTGCAGTTACTGTGCCTGATGTTTTCAAGCTGTTGCATACTATTAGAGCTAACAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCAAAAAATTCATTGGCTAGTTTAGCATTGTCTCTGAACAATAATCTTCTTGAGTTTTACTCCATTGAACTTGGTGAAACCAGAAAAACACTTGCTATTGATCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAATTACTGGCGCTTGCCTAAGAACCATTGATTCTGGGTATGGACTGTGCAGTTTAATTCTTCCCACTAACAAGTATGGGCTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGCGGCACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCTCAATTGCTGCCCTACCTCATAAAAATGGTTTTGTCACTGGAAGTGCTGATCATGATGTCAAATTTTGGGAGTACCAATTGAAGCAAAAACCTGGTCAAGCTACTAAGCAACTCGTAGTGTCAAATGTCAGTACCATGAAAATGAATGATGACGCCCTTGTTGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTATTGGATAGTACTGTGAAGGTTCACTTTGCAGACACGTTCAAATTTTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGCTCTGCAGATAAAAATTTAAAGATCTGGGGTCTAGACTTTGGTGACTGTCATAAATCCATTTTTGCACATGCTGACAGTGTTATGGCAGTACAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCTGATAAATTTGAGCTGCTGTTGACTCTAGAAGGACACCATGCAGATATTTGGTGTCTTGCAGTCAGTAATCGTGGGGATTTCATTGTCACTGGATCTCATGATCGTTCCATCCGACGCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAAAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTCGACAATGCATTTGAAAACAAGTATGCATCAAAGGAAGAAATACCAGAGGAGGGAGCGGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTACTGCAACTGACTTAATTATTGAAAGATTAGACATCGCAGAAGCTGAAAAAAAGCGCATTGCAGAACATCAGGAGGATAAAAATAACAGAAATGTTGCTGTTTTCCAATCAAATCCGCTTATGAACGGGCTTTCACCTTCTGATTATGTTTTGAGTGCATTTTCAAATGTTCACACCAATGATTTGGAGCAAACATTACTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTCTCGTACTTGAAAGACTGGACTTCATATTCTGATAAGGTTGAGCTTGTTTGCAGAGTAGGTACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTGCCACACCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGGATGGAAGGATATCTTTGGTTTTAACCTCGCAGCCATGGATCATATTCAGCAATTGATGGCATCTAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGACAATCTAAACGTTTAGAAGAAAGGTCACACACTGGAGAAGTGAAGCGAAAGAAGAAAAAGACATAA 2835 0.4303 MVKAYLRFEPAASFGVIASVDSNISYDSSGKHLLSPALEKIGVWNVRQGLCTKTLTPSTASRGPSLAVTSIASSPSSLIAGGYGDGSIRIWDSDKGACETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLNSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADSELHFYVIRDESVDGNSLNGGEESSIQSKWEVLRHFGEIQRQSRDRVATVQFNKSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHSKETLDGVENGDGNNANKGDNSSVTHVPTETTNPAVTVPDVFKLLHTIRANKKICSISFCPITPKNSLASLALSLNNNLLEFYSIELGETRKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPITGACLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQLKQKPGQATKQLVVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYASKEEIPEEGAVALAGKQTQETLTATDLIIERLDIAEAEKKRIAEHQEDKNNRNVAVFQSNPLMNGLSPSDYVLSAFSNVHTNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRVGTLLLQTHYNQLLATPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQLMASRSDALFHDARSKLLEIRARQSKRLEERSHTGEVKRKKKKT 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Vimu6g02459 944 MobiDBLite consensus disorder prediction 293 338 - -
Vimu6g02459 944 Gene3D - 18 107 IPR015943 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Vimu6g02459 944 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Vimu6g02459 944 MobiDBLite consensus disorder prediction 925 944 - -
Vimu6g02459 944 SMART WD40_4 397 435 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 615 654 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 438 475 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 478 517 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 48 92 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 137 176 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 179 218 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 532 570 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 657 696 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 95 134 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 240 283 IPR001680 GO:0005515
Vimu6g02459 944 SMART WD40_4 573 612 IPR001680 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Vimu6g02459 944 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Vimu6g02459 944 Coils Coil 285 305 - -
Vimu6g02459 944 Pfam WD domain, G-beta repeat 62 92 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 97 134 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 181 216 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Vimu6g02459 944 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Vimu6g02459 944 CDD WD40 404 696 - -
Vimu6g02459 944 FunFam Transducin family protein / WD-40 repeat family protein 60 320 - -
Vimu6g02459 944 SUPERFAMILY WD40 repeat-like 358 698 IPR036322 GO:0005515
Vimu6g02459 944 FunFam WD repeat domain 3 449 641 - -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Vimu6g02459 944 CDD WD40 98 517 - -
Vimu6g02459 944 FunFam Transducin family protein / WD-40 repeat family protein 335 448 - -
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
Vimu6g02459 944 Gene3D - 644 709 IPR015943 GO:0005515
Vimu6g02459 944 Gene3D - 240 445 IPR015943 GO:0005515
Vimu6g02459 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 217 IPR001680 GO:0005515
Vimu6g02459 944 Pfam Dip2/Utp12 Family 799 899 IPR007148 -
Vimu6g02459 944 Gene3D - 446 643 IPR015943 GO:0005515
Vimu6g02459 944 Gene3D - 108 239 IPR015943 GO:0005515
Vimu6g02459 944 MobiDBLite consensus disorder prediction 314 338 - -
Vimu6g02459 944 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 4 942 - -
Vimu6g02459 944 FunFam WD repeat-containing protein 3 isoform A 650 708 - -
Vimu6g02459 944 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Vimu6g02459 944 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Vimu6g02459 944 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Vimu6g02459 944 SUPERFAMILY WD40 repeat-like 26 393 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02459 577 705 Miscellaneous Gene Families AT5G08390 27.132 1.38e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02459 K14556 - gmx:100775810 1735.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02459 6 21394568 21403743 Vimu6g02459 6 21394568 21403743 ECH