Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02397 ATGATGGTTCTGGGAAATCGTTCTGCTCTTCGCATTCTTCCCAATTCGCACTTCAACAAATTCAGTTCCTTCTTCTGCTCCCAATCACTCACAGTCTCCGAATCCCCCTCAGTAAACCAGCGTCGTATTCAAAAGGTTCAAAAACTCGAAACCTTACTCAACCGCGGTCGCACAATCACCGCAAGAAGGTTCCTCAAATCCCTTTTTCTCTCCAAAACCACATTCTCCTCTCTCTCCGAACTCCATGCCCACGTCTCCAAACCCCTCTTTTCGGACACCCTTTTATGGCTCTGCTCCGTTTCCAAAATGCTCAACGAAGCCACCGACTTGTACTTTTCCATGCGAAAAGACGGATTTCTCCCCTCCACGCGTTCCGTCAATCGTTTGCTCCGAACCCTGGTGGCTTCCGGACATTTCGAGAAAACTCTTTCTGTCTTCGCTGACGTTGTGGATTCTGGTATTCGGCCCGATGTTGTTACTTACGGGAAAGCTGTTCAGGCCGCGGTGATGTTGAAGGACCTCGATATGGGTTTTGAGTTAGTGAGTTCCATGGAAAAAGAAGGACTGGGTCCTTATGTTTTTGCTTATAACTTGGTCTTGGGTGGATTGTGTAAAGTGAGAAGGATCAAGGATGCTCGGAAACTGTTCGATGAAATGGTTCAGAGAAATATGGTTCCGAATACTGTTACTTATAACACGCTCATTGATGCGTACTGTAAGGTGGGTGATTTAGAGGAAGCTTTTGGCTTCAAGGAGAGGATGAAGCAACTGAATGTGGAGTGTAATCTTGTCACGTATAATTGCTTGTTAAATGGCCTTTGTGCCTCCGGGAGGATGGAAGATGCGAGGGAGGTGTTGTTAGAGATGGAGGGCTGTGGCTTTTTGCCCTGTGGGTTTTTGAGTGTTGTGCTTGATGGTCATCCGAATGGCGCGGGTGATCGTGGTTTATTTGATGGAAAAGAAATAAGGATAGATGAACGAACTTATTGTATTTTACTGAATGGACTTTGCAGGGTTGGAAGGATTGAAAAGGCTGAAGAGGTTCTGAACAAACTAGTGCATAATGGAGTTACTCCAAGTAACATTTCATATAACATACTTGTGAACGCATATTGTCAAAAGGGTGACGTGAAGAAAGCTACGCTTACAATTGAACAAATGGAGGAGCGAAGGATGCAGCCTAACCGCATCACTTTTAATACCCTCATTAGCAAGTTCTGTGAAACTGGAGAGGTGGACCAGGCAGAGACATGGGTTAAGAGGATGATAGAGAAGGATGTTTCCCCCACTGTGGAGACTTATAACTCATTGATTCATGGTTATGGTCAGAGGGGCAATTTTGTCAGGTCTTTCGAGATTCTCTACGAAATGGAGAAGGCTGGGATAAAGCCTAATGTCATCAGCTTTGGTTCTCTTATAAACTGTCTTTGCAAAGATCGTAAGCTTCTTGATGCTGAGATTATGCTTGCAGATATGATAGGTTGTGGGGTTTCTCCGAATGCAGAAATATATAATATGCTCATTGAAGCTAGTTTCTCACTAAGTAAATTGAAAGATGCTTTCAGATTTTTTAATGAATTGATGCAAGGTGGAATAGATGCAACTCTTGTGACATACAATACGATGATAAATGGACTCGGAAGAAATGGAAGGGTGAAGGAAGCTGAGGATTTGTTTCATGAAATGGCAGGCAAGGGCTGTAATCCAGATGTAGTGACATACAATTCCCTGATCTCAGGATATGCCAAGTCATTAAACACCCAGAAATGTATTGAATTGTATGATAGGATGAAGATGTTAGGCATAAAACCTACAATTGGGACTTTTCATCCGTTGATCTGTGCATGCAGGAGGGTAGGCATGGCGGAAGTGGAGAGAAGGTTTCAGGAAATGTTACAAATGGATTTGGTTCCCGATCGATTTGTGTATAATGAAATGATTCACGGTTATGCTGAAGATGGAAATGTTCTGAAGGCAGTGTCTTTGCACCAACAGATGCTTGATCAGGGAGTTGATTCGGACAAGGTGACTTACAATTGCTTGATTCTAGCATATCTTAGAGACGGAAGGGTTTCCGAAATAAAGCATATTGTTGATGATATGAAGGCTAAAGGGCTGGTTCCAAAGACTGATACATATAGCATTCTGGTTAAGGGACATTGTGACTTGAAAGATTTCAATGGTGCATACTTTTGGTATAGAGAAATGATTGACGTGGGTTTGTTTTTAAATGCTCGCATTTGTTCCCTGCTAATTTCCGGACTAAGGGAGGAGGGAATGCTGCCAGAGGCCCAAATTGTATCCTCAGAAATGAGTAGTAGAGGACTGAATAACTAG 2337 0.4305 MMVLGNRSALRILPNSHFNKFSSFFCSQSLTVSESPSVNQRRIQKVQKLETLLNRGRTITARRFLKSLFLSKTTFSSLSELHAHVSKPLFSDTLLWLCSVSKMLNEATDLYFSMRKDGFLPSTRSVNRLLRTLVASGHFEKTLSVFADVVDSGIRPDVVTYGKAVQAAVMLKDLDMGFELVSSMEKEGLGPYVFAYNLVLGGLCKVRRIKDARKLFDEMVQRNMVPNTVTYNTLIDAYCKVGDLEEAFGFKERMKQLNVECNLVTYNCLLNGLCASGRMEDAREVLLEMEGCGFLPCGFLSVVLDGHPNGAGDRGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLNKLVHNGVTPSNISYNILVNAYCQKGDVKKATLTIEQMEERRMQPNRITFNTLISKFCETGEVDQAETWVKRMIEKDVSPTVETYNSLIHGYGQRGNFVRSFEILYEMEKAGIKPNVISFGSLINCLCKDRKLLDAEIMLADMIGCGVSPNAEIYNMLIEASFSLSKLKDAFRFFNELMQGGIDATLVTYNTMINGLGRNGRVKEAEDLFHEMAGKGCNPDVVTYNSLISGYAKSLNTQKCIELYDRMKMLGIKPTIGTFHPLICACRRVGMAEVERRFQEMLQMDLVPDRFVYNEMIHGYAEDGNVLKAVSLHQQMLDQGVDSDKVTYNCLILAYLRDGRVSEIKHIVDDMKAKGLVPKTDTYSILVKGHCDLKDFNGAYFWYREMIDVGLFLNARICSLLISGLREEGMLPEAQIVSSEMSSRGLNN 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 743 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vimu6g02397 778 Gene3D Tetratricopeptide repeat domain 624 777 IPR011990 GO:0005515
Vimu6g02397 778 Gene3D Tetratricopeptide repeat domain 212 307 IPR011990 GO:0005515
Vimu6g02397 778 Gene3D Tetratricopeptide repeat domain 74 211 IPR011990 GO:0005515
Vimu6g02397 778 Gene3D Tetratricopeptide repeat domain 489 623 IPR011990 GO:0005515
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 433 466 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 676 708 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 195 228 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 328 360 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 537 571 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 229 262 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 264 296 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 642 671 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 712 744 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 572 605 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 362 395 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 397 431 IPR002885 -
Vimu6g02397 778 NCBIfam pentatricopeptide repeat 468 501 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Vimu6g02397 778 Gene3D Tetratricopeptide repeat domain 422 488 IPR011990 GO:0005515
Vimu6g02397 778 SUPERFAMILY TPR-like 329 562 IPR011990 GO:0005515
Vimu6g02397 778 Pfam PPR repeat 642 671 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat 503 532 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Vimu6g02397 778 Gene3D Tetratricopeptide repeat domain 316 421 IPR011990 GO:0005515
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Vimu6g02397 778 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 170 492 - -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat family 674 721 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat family 429 478 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat family 226 274 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat family 363 407 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat family 536 583 IPR002885 -
Vimu6g02397 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vimu6g02397 778 Pfam Pentatricopeptide repeat domain 144 201 IPR002885 -
Vimu6g02397 778 Pfam PPR repeat 322 351 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02397 325 777 Glycosyltransferase AT1G05670 26.220 3.53e-54 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02397 - - gmx:100786292 1280.77