Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02375 ATGGTTTACACCATCTCGGGAATTCGATTTCCGGTTGTTCCTTCGCTGAACGCCTCCAGCCTCCGTGGCGATCGCAGGGCAGCGTCTCTTCCTGTTTTTCTCAGAAAGAACGACTTCTCTCGGAAAATCCTCGCCGTAAAATCTTCTCATGATTCTGATTCCCCGTCTTCTGCAATTGCTGAATCTGATAAGGTTCTTATTCCTCAAGATCAAGATAACTCTGCATCCTTGACAGATCAACTTGAAACGCCTGTTATAACCTCAGAGGATGCACATAATCTAGAGGATTTAACAATGGAAGATGAGGATAAATACAGCATTAGTGAAGCAGATACCAGTTACAGACAGATTGAAGGTGGGCTAGGTTCTGTGGTATCTGTTGGCGAGAAAGTAAAGATACCAAGTGATGAAGCTAAACCTAAGACCATTCCCCGACCTGGTGCTGGGCAGAAAATATATGAGATTGATCCATCTTTGCTAGCCCACCGTGAGCATCTTGATTTCCGTTTCGGACAATACAAAAGATTGCACGATGAAATTAACAAGTATGAAGGTGGTCTGGATACATTTTCTCGTGGCTATGAAAAATTTGGCTTCATACGCAGTGCTACAGGCGTTACTTACAGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCACTGATTGGAGACTTCAACAATTGGAATTCAAATGCAGATGTGATGACTCGGAATGAGTTTGGTGTTTGGGAGATTTTTTTGCCAAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGGGTCAAGATCCGCATGGATACTCCCTCTGGAGTCAAGGACTCAATTCCTGCTTGGATCAAGTTTTCTGTACAGGCTCCTGGTGAAATTCCATATAGCGGAATATACTATGATCCCCCAGAAGAGGAAAAATATGTATTCAAACATCCACAGCCAAAGAGACCAAAATCACTTAGAATATATGAGTCACATGTTGGAATGAGCAGTCCGGAGCCAATGATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTACAATGCTGTCCAGATTATGGCCATTCAAGAACATTCTTATTATGCCAGCTTTGGGTACCATGTCACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAATCTCTGATAGACAAAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACACAGCCATGCATCAAATAATACTTTGGATGGCCTAAACATGTTTGATGGAACTGATAGTCATTACTTCCATCCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTCAATTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGACGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGGTTGCAGGTAGCATTCACTGGAAATTACAGTGAGTACTTTGGTATGGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGCTAATGATCTCATTCATGGGCTCTTCCCCGAGGCTGTTACCATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCTACACAAGATGGTGGGGTTGGTTTTGATTATCGCCTGCAAATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGCAAGATGAGGACTGGAAAATGGGTGATATTGTCCACACACTAACAAACAGAAGATGGCTGGAAAAATGTGTAGCTTATGCTGAGAGTCATGATCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCGTTAGACAGGCCATCTACACCTCGTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACCATGGGACTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAGTTTGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGAACAACAACTTCCTAATGGCTCAGTAATTCCAGGGAACAACTACAGTTATGATAAATGCAGGCGAAGATTTGACTTGGGAGATGCGGATTATTTAAGATATCGAGGAATGCAAGAATTTGATCGAGCCATGCAGCTTCTAGAAGAAAAGTTTGGTTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAATCTTTGAAAGGGGCAACCTCGTCTTTGTCTTCAATTTTCATTGGCACAACAGCTATTCAGATTACAGAGTTGGCTGCCCAACCCCTGGGAAATATAAGATTGTTTTGGATTCAGATGATGCCTTGTTTGGTGGCTTCAATAGGCTCAACCACTCTGCTGAGTACTTCACTAATGAAGGATGGTATGATGACCGACCGCGATCCTTTCTTGTCTATGCACCTTCTAGAACAGCAGCAGTTTATGCCCTTGCAGATGATGATCTGGAACCAGCCCTTTCAGATGAAGCTGAACCAGTCCTTGCAGATGAAGCTGAACCAGAGCCAGTTGATCCTTGA 2571 0.4302 MVYTISGIRFPVVPSLNASSLRGDRRAASLPVFLRKNDFSRKILAVKSSHDSDSPSSAIAESDKVLIPQDQDNSASLTDQLETPVITSEDAHNLEDLTMEDEDKYSISEADTSYRQIEGGLGSVVSVGEKVKIPSDEAKPKTIPRPGAGQKIYEIDPSLLAHREHLDFRFGQYKRLHDEINKYEGGLDTFSRGYEKFGFIRSATGVTYREWAPGAKSAALIGDFNNWNSNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGVKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHVGMSSPEPMINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEELKSLIDKAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDSHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGMATDVDAVVYLMLANDLIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLQMAIADKWIEILKKQDEDWKMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQQLPNGSVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDRAMQLLEEKFGFMTAEHQYISRKNEGDKVIIFERGNLVFVFNFHWHNSYSDYRVGCPTPGKYKIVLDSDDALFGGFNRLNHSAEYFTNEGWYDDRPRSFLVYAPSRTAAVYALADDDLEPALSDEAEPVLADEAEPEPVDP 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02375 856 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 196 279 IPR004193 GO:0004553|GO:0005975
Vimu6g02375 856 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 730 830 - -
Vimu6g02375 856 Gene3D - 730 835 IPR013780 -
Vimu6g02375 856 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 126 830 - -
Vimu6g02375 856 SUPERFAMILY Glycosyl hydrolase domain 731 829 - -
Vimu6g02375 856 Pfam Alpha amylase, catalytic domain 345 417 IPR006047 GO:0005975
Vimu6g02375 856 CDD AmyAc_bac_euk_BE 301 716 - -
Vimu6g02375 856 Gene3D Immunoglobulins 192 304 IPR013783 -
Vimu6g02375 856 SUPERFAMILY (Trans)glycosidases 308 719 IPR017853 -
Vimu6g02375 856 SMART aamy 335 715 IPR006047 GO:0005975
Vimu6g02375 856 Gene3D Glycosidases 156 725 - -
Vimu6g02375 856 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 192 304 - -
Vimu6g02375 856 SUPERFAMILY E set domains 190 299 IPR014756 -
Vimu6g02375 856 CDD E_set_GBE_euk_N 204 297 - -
Vimu6g02375 856 Pfam Alpha amylase, C-terminal all-beta domain 734 827 IPR006048 GO:0003824|GO:0005975|GO:0043169
Vimu6g02375 856 FunFam 1,4-alpha-glucan branching enzyme 299 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02375 Vimu-Chr6 20717311 20729884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02375 28 832 Glycoside Hydrolase AT5G03650 76.733 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02375 K00700 - gmx:100816963 1616.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02375 6 20717311 20729884 Vimu6g02375 6 20717311 20729884 ECH