Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02354 ATGTTGGTGCAAAGAACGTGCATGCTAGGGTTCTTTCTAATCTTCGGAATCTTCGAACTCGACGCCGTTTATGGTTACAATCGACCACCACCTCGTCAAAACCTCTTCATTCCAAACGCGGATCACTCCGACTTGCCACAACAGGTACACATATCTCAAGTGGGAGAAAACAAGATGAGGATATCGTGGATCACAGACAGCCCAACTTCACCAAAGGTTTCGTACGGTCCATCTCCTTCAGCAAATGCATTATCTGCCACAGGGACAACCTCTTCCTACCGTTATCTCATTTACAAATCCGGTCAAATTCATGACGTTGTGATTGGTCCCCTCAACCCCAACACTGTCTACTACTACCGTTTGGGTGACCCACCCTCTTCCGAAACATACAGTTTCAAGACTCCACCTTCTCAGCCTCCCATCAAGTTTGCAGTAGTTGGAGATCTTGGACAAACGGATTGGACGACTTCGACCTTGCAGCATGTAGCTAAATCAAACTACGACATGCTGATTCTACCAGGTGACCTATCCTACGCAGATTTTATTCAACCTCTATGGGACTCCTTTGGTCGGTTGGTAGAACCTTTAGCTAGCCAGCGTCCTTGGATGGTCACCCAAGGCAACCACGAAGTGGAGAAGATTCCTATCCTTCACTCAGAGCCATTCACCGCATACAACGCCAGATGGCACATGCCCTTCGAAGAAAGTGGATCAGACTCTAACCTCTACTATTCTTTCGATGTCGCTGGCGTTCATGTCATCATGCTTGGCTCCTACGCCAAATTTCACCCTTCTTCTCCGCAATACAATTGGCTCAAATCTGACCTGCAAAAGGTTAACAGGGGAAAAACTCCCTGGGTTCTGGTGCTCATTCACGCTCCTTGGTACAACTCCAACACTGCTCATCAGGGTGAGCCTGAATCCCTTGAAATGAAAGCTTCCATGGAAGACTTGCTCTTCAAAGCCCGTGTCGATGTTGTTTTTGCAGGCCACGTTCATGCTTATGAACGCTTTACACGGGTTTATAAAGACAAAGCTAACAATTGTGGTCCTGTGCATATCACAATCGGGGACGGGGGTAACCGTGAAGGCCTTGCTAATAAGTACATAGATCCTAAGCCAGCGATATCAATGTTCAGGGAGGCTAGCTTTGGACATGGTACATTCGAAGTCTTTAATGCATCTCACGCACGGTGGACATGGCATCAGAACGATAACGATGAAGCTGTTGTTAGTGATAGTATCTGGCTTACGAGTTTCTTCTCCAATCCTTCTTGTAAACAGTGA 1287 0.4693 MLVQRTCMLGFFLIFGIFELDAVYGYNRPPPRQNLFIPNADHSDLPQQVHISQVGENKMRISWITDSPTSPKVSYGPSPSANALSATGTTSSYRYLIYKSGQIHDVVIGPLNPNTVYYYRLGDPPSSETYSFKTPPSQPPIKFAVVGDLGQTDWTTSTLQHVAKSNYDMLILPGDLSYADFIQPLWDSFGRLVEPLASQRPWMVTQGNHEVEKIPILHSEPFTAYNARWHMPFEESGSDSNLYYSFDVAGVHVIMLGSYAKFHPSSPQYNWLKSDLQKVNRGKTPWVLVLIHAPWYNSNTAHQGEPESLEMKASMEDLLFKARVDVVFAGHVHAYERFTRVYKDKANNCGPVHITIGDGGNREGLANKYIDPKPAISMFREASFGHGTFEVFNASHARWTWHQNDNDEAVVSDSIWLTSFFSNPSCKQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02354 428 Gene3D - 45 137 - -
Vimu6g02354 428 PANTHER ACID PHOSPHATASE RELATED 39 418 IPR039331 GO:0003993
Vimu6g02354 428 Gene3D - 138 426 IPR029052 -
Vimu6g02354 428 Pfam Calcineurin-like phosphoesterase 142 335 IPR004843 GO:0016787
Vimu6g02354 428 Pfam Iron/zinc purple acid phosphatase-like protein C 350 410 IPR025733 -
Vimu6g02354 428 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 136 IPR008963 GO:0003993|GO:0046872
Vimu6g02354 428 Pfam Purple acid Phosphatase, N-terminal domain 46 134 IPR015914 GO:0003993|GO:0046872
Vimu6g02354 428 CDD MPP_PAPs 137 419 IPR041792 -
Vimu6g02354 428 SUPERFAMILY Metallo-dependent phosphatases 138 408 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02354 Vimu-Chr6 20562333 20565621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02354 46 386 Miscellaneous Gene Families AT2G03450 28.224 5.50e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02354 K22390 - gmx:100794764 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02354 6 20562333 20565621 Vimu6g02354 6 20562333 20565621 ECH