Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02343 ATGGAATTGAAAGAGATTCAGAGACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCCGCCACTGGACACGCCGGTATACCGCTCGTCTTTGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGTCTATGGGCTTGCAAGGCGGTTTTGGAAGAAACACACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGGAAGCTTTTGGCCACTGGAAGTTTCGACGCCACCACTGCCATTTGGGAAAATGTTGGTGGCGATTTTGAGTGTGTTTCTACTTTGGAGGGACATGAAAATGAAGTGAAGAGTGTCTGTTGGAATGCGTCTGGCACGTTGCTTGCGACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTTCTGCCCGGGAATGAGTTTGAGTGCGTGTCTGTGCTGCAAGGACATGCGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGATGATATCTTATTTTCGTGTAGTTATGATAATAATATTAAGGTTTGGGCGGATGAAGGTGATAGTGACGATTGGCAATGCGTCCAAACCCTTGGGGTGCCTAATAATGGACATACTTCCACTGTCTGGGCTCTCTCCTTCAACGCGAGTGGTGACAGAATGGTTTCGTGTAGCGATGATCTTACCGTGAAGGTCTGGGGAACAGAAAACACAGAGATTCAATCTGGTGGTGGGTTTGCACCCTGGAAACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCCGCTGATGATGCTATACGCCTTTTTGTGGATGACAATGAAAGTCAGGTTGGTGGTCCTCTCTACAAGTTGCTGCTAAAGAAAGAGAAGGCCCATGACATGGATGTAAATTTTGTGCAGTGGAGCCCTGGGGTAAGATTCTCAGACGCTACTCTAATGGAAACGCATTGA 999 0.4795 MELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKAVLEETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVCWNASGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHAQDVKMVKWHPTDDILFSCSYDNNIKVWADEGDSDDWQCVQTLGVPNNGHTSTVWALSFNASGDRMVSCSDDLTVKVWGTENTEIQSGGGFAPWKHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDVNFVQWSPGVRFSDATLMETH 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 182 - -
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 232 - -
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 139 - -
Vimu6g02343 332 SMART WD40_4 144 183 IPR001680 GO:0005515
Vimu6g02343 332 SMART WD40_4 54 94 IPR001680 GO:0005515
Vimu6g02343 332 SMART WD40_4 247 286 IPR001680 GO:0005515
Vimu6g02343 332 SMART WD40_4 190 233 IPR001680 GO:0005515
Vimu6g02343 332 SMART WD40_4 2 47 IPR001680 GO:0005515
Vimu6g02343 332 SMART WD40_4 99 138 IPR001680 GO:0005515
Vimu6g02343 332 SUPERFAMILY WD40 repeat-like 3 319 IPR036322 GO:0005515
Vimu6g02343 332 Gene3D - 6 331 IPR015943 GO:0005515
Vimu6g02343 332 CDD WD40 5 285 - -
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Vimu6g02343 332 PANTHER WD40 PROTEIN CIAO1 1 320 IPR028608 GO:0016226|GO:0097361
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 9 47 - -
Vimu6g02343 332 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 1 329 - -
Vimu6g02343 332 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 325 IPR028608 GO:0016226|GO:0097361
Vimu6g02343 332 Pfam WD domain, G-beta repeat 5 46 IPR001680 GO:0005515
Vimu6g02343 332 Pfam WD domain, G-beta repeat 191 232 IPR001680 GO:0005515
Vimu6g02343 332 Pfam WD domain, G-beta repeat 146 182 IPR001680 GO:0005515
Vimu6g02343 332 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Vimu6g02343 332 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 139 IPR001680 GO:0005515
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 47 IPR001680 GO:0005515
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Vimu6g02343 332 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Vimu6g02343 332 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Vimu6g02343 332 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Vimu6g02343 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Vimu6g02343 332 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02343 77 284 Miscellaneous Gene Families AT5G08390 27.751 1.43e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02343 K24730 - gmx:100778826 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02343 6 20476016 20480483 Vimu6g02343 6 20476016 20480483 ECH