Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02342 ATGCCTGCGATCCCCGAAGAGCCACTCCTGGCCCCGAACCCCGACCGCTTCTGCATGTTCCCAATCCAATATCCCCAAATCTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACCGCCGAAGAGGTTGACCTCTCCCAAGACCTCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCCACTTCATCACCCACGTCCTTGCCTTCTTTGCCGCCTCCGATGGCATCGTTCTCGAAAACCTCGCGGCCCGCTTCACGAAGGAAGTCCAAGCCGCCGAGGCTCGTGCTTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCGAAAAGAATCACCTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAAGGCCCAATGGGCCTTGCGCTGGATCGATGCCACCGACTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGCTTCACTGCGACTTCGCGTGTCTCTTGTACTCTCTCCTCAGGAAGAAGCTAACTGAGGAGCGCGTGAAGGAGATTGTGCGCGAAGCGGTTGACATAGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGTGCGTTGGTGGGGATGAACGGGGAGCTGATGAGTCAGTATATCGAGTTTGTCGCGGATCGGCTGCTTGGTGCGCTTGGATGCGGGAAGGTGTACGATGTTCAGAATCCCTTTGATTGGATGGAGCTTATATCTCTCCAGGGGAAAACTAACTTCTTTGAAAAGCGCGTTGGGGACTATCAGAAGGCTTCTGTAATGTCTAGCTTGAACGGTAATGGAGGGGCACATGAAGCTGTTGCTGTGGCAACTGCAATTACAAGACATTTGGAGATTGATATCGTTCAGCTGCAAACTGCAGGGGCAGCAGGAGCACCACCACCAATGTCATGTTTGAATGTGTATGTCGGTTTGTCTCACAATGTGTATGTTTTCCTTATACAAAAATTGTCTAATGCTTTTTAG 1137 0.5374 MPAIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWDSLTDGERHFITHVLAFFAASDGIVLENLAARFTKEVQAAEARAFYGFQIAIENIHSEMYSLLLETYIKDSTEKNHLFRAVDTIPCVAKKAQWALRWIDATDSFAERLVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLTEERVKEIVREAVDIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYDVQNPFDWMELISLQGKTNFFEKRVGDYQKASVMSSLNGNGGAHEAVAVATAITRHLEIDIVQLQTAGAAGAPPPMSCLNVYVGLSHNVYVFLIQKLSNAF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02342 378 ProSitePatterns Ribonucleotide reductase small subunit signature. 105 121 IPR030475 -
Vimu6g02342 378 CDD RNRR2 17 291 IPR033909 GO:0009263
Vimu6g02342 378 Coils Coil 218 238 - -
Vimu6g02342 378 Gene3D Ribonucleotide Reductase, subunit A 3 307 IPR012348 GO:0016491
Vimu6g02342 378 SUPERFAMILY Ferritin-like 5 307 IPR009078 -
Vimu6g02342 378 Pfam Ribonucleotide reductase, small chain 16 282 IPR000358 GO:0009263
Vimu6g02342 378 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 7 316 IPR000358 GO:0009263
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02342 Vimu-Chr6 20472219 20473895 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02342 K10808 - gmx:100790224 624.009