Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02341 ATGGCGACGAAGAAGTTGATGAAGGCCAGAGCATTGGCAACAGTAAAACCTTCTTCAGCGATCCCCAACCTCCCTCTTCCCTCTCCACCCTCTGAAACACCCGTGTCCCAAGTTCACTATGCCCGCTTCCTGGACTTCTTGAAGGCCCATTGGGCCCCGCCGTTCACCCCCGACACCCTCCTCCACTTCCTAAAATCGAAGCTCCACCACCACCCTTCCTTCTCTCAATTCGACTTCCACCTCTTCACCTGGGCCTCCTCCCTCGACTCATTCCACCACACCCACGCCACGTTCCACTGGATGGCCCGCACCCTCGCCGCCACCCATCGCCTCCCCCAGCTCCGCGCCCTCCTCCACCTCATCGCCACCCACCCCTGCCCCTGCTCTCCCTCCATCTTCTGCTGCCCCCACACCCAACCCATCTTCTCCCACGCCATCCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTCTCCGCATTCCACTCCATGACCAAACTGATCGACTCCAAGCCAGACGTCGCCGTTTTCAACGTCCTCATCCACGCCTTCGTCAAACACGGTAACCTAAACCAAGCCCTCCAGTTTTACCGCGAGATGGTGGTTACCCACCGCGTTAAGCCTGACGTTTTCACCTTCAACATTTTGATAAGCGGTTACTGCCGGAACTCGCAGTTCGCGTTGGCGTTGGATGTGTTTCAAGAGATGGGGAAAATGGGGTGCGAGCCCAATGTGGTTACTTTCAATACCTTGATCAGGGGGATGTTTAGAGAGGGGAGGGTTGAGGATGCCATTGAGATGGCTCGCGAGATGGTTCAATTAGGGTGTGAGCTTTCGTGTGTTACTTGTGAGATTTTGGTTCAAGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGAGTTTTCTGAAAAGAGGGTTTTGCCTAAAGGGTTTGATTGTTTTGCTTTGGTGGAGGTTTTGTGTGGGCAAGGGTGTGCTGTGAGAGCGTTGGAAGTTGTTTATGAGTTGTGGAATGGTGGGAGTGTTCCGAGTTTGGTTGCTTGTATTGCTGTGGTTGATGGGTTGAGGGGGTTGCGGAAAACCGATGAGGTGCAGAGATTGGTGGAAAGGATGCTTGCTGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTGTGTTCTTCGGGATATTTGCGATGCACGCAGAACCGATGAGGCGAATAGATTGATGTTACTTGCTTTGAGCAAGGGTTTGGAACCGGATGACATGACTTATAGGACTTTGGTTATAGGGTATACGGAGGAGGGAGGGAGGGAGAAAGGAGAGTTTCTGGTGAATGAAATGTTGGATAGAGGGTTTATACCTAATCTTGCTTCATATAATAAGTTGATGAGTGGATTGTCTAATTGCAGGCCCTCTACATGCCGTCAAGTAAACAAATTTGATCGCTGA 1449 0.521 MATKKLMKARALATVKPSSAIPNLPLPSPPSETPVSQVHYARFLDFLKAHWAPPFTPDTLLHFLKSKLHHHPSFSQFDFHLFTWASSLDSFHHTHATFHWMARTLAATHRLPQLRALLHLIATHPCPCSPSIFCCPHTQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPDVAVFNVLIHAFVKHGNLNQALQFYREMVVTHRVKPDVFTFNILISGYCRNSQFALALDVFQEMGKMGCEPNVVTFNTLIRGMFREGRVEDAIEMAREMVQLGCELSCVTCEILVQGLCKEGRVLQACELLLEFSEKRVLPKGFDCFALVEVLCGQGCAVRALEVVYELWNGGSVPSLVACIAVVDGLRGLRKTDEVQRLVERMLAEGMVLDVVTFNCVLRDICDARRTDEANRLMLLALSKGLEPDDMTYRTLVIGYTEEGGREKGEFLVNEMLDRGFIPNLASYNKLMSGLSNCRPSTCRQVNKFDR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02341 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vimu6g02341 482 Pfam PPR repeat 282 311 IPR002885 -
Vimu6g02341 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vimu6g02341 482 Gene3D Tetratricopeptide repeat domain 321 480 IPR011990 GO:0005515
Vimu6g02341 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 209 IPR002885 -
Vimu6g02341 482 Pfam Pentatricopeptide repeat domain 415 464 IPR002885 -
Vimu6g02341 482 Pfam PPR repeat 172 202 IPR002885 -
Vimu6g02341 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vimu6g02341 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vimu6g02341 482 NCBIfam pentatricopeptide repeat 177 211 IPR002885 -
Vimu6g02341 482 NCBIfam pentatricopeptide repeat 282 314 IPR002885 -
Vimu6g02341 482 NCBIfam pentatricopeptide repeat 247 280 IPR002885 -
Vimu6g02341 482 NCBIfam pentatricopeptide repeat 212 246 IPR002885 -
Vimu6g02341 482 Pfam PPR repeat family 209 256 IPR002885 -
Vimu6g02341 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vimu6g02341 482 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 89 244 - -
Vimu6g02341 482 Gene3D Tetratricopeptide repeat domain 239 312 IPR011990 GO:0005515
Vimu6g02341 482 Gene3D Tetratricopeptide repeat domain 59 238 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02341 141 466 Glycosyltransferase AT1G05670 29.878 1.30e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02341 - - gmx:100796880 753.436