Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02331 ATGACGGAAGTGCTTCAGTTGCCTTCATCGTCAAGCTGTGGTGGTCTCACACCCAATGATGGGTCGCACCCAAGTTCCCTTATTAACGCTCCCACTGTGGAAGAAGGGGTGCTGCCACAGTCCCCTTTGGATTTGGAAGCTGAAGAAGAAGAAGAAGAGAGAAAAAGGGAAAGAGAAAGGGATCAGCTTTCTATTTTGACCCTTTTGATAGCTACGTTTCGGAAGTCTCTGATTGGGTGCAGCACTACAGCTTCTTCTACTTCTTCTTCCATGGAGATTGGGTGGCCTTCCAATGTGAGGCACGTGGCTCATGTCACCTTCGATCGCTTCCATGGGTTTCTTGGTTTGCCTGTTGAATTTGAACCAGAAGTTCCCAGGAGGTCTCCCAGTGCTAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTCTCTTTTGACGCCAGAGGAAATAGCGTGCCTACAATACTGCTGTTAATGCAAAGACATTTGTATGCACAAGGAGGCCTGCAGGCTGAAGGAATCTTCAGAATCAATGCTGAAAACGGTCAAGAGGAGTTTGTGAGGGAACAATTGAATAGAGGAGTTGTACCAGATGGCATTGATGTGCACTGCTTGGCAGGTCTCATAAAGGCTTGGTTCAGAGAACTACCTACTGGGGTATTGGACCCTCTCTCACCTGAGCAGGTAATGCAATCCCAGTCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCCTTGCTAGATTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAGCTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTCGCACCAAACATGACCCAATGGTTTCTTGCATTGCTGAAAATTTTCTGTTTGCCGTGTAAAGTCACTGTTTTGGTGAAAGGTTATGGTCGATTTATGTTGCAGCAGTGGCAATGTGTTTTTGCTCCATTAATCTTGCTTCTAGAGATGGCGGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACACTGGTCGTAAAGACACTTAGGGAAAGAGAGGAGTCTATTGTAAAATCAAATCCTGGTCCAAACCTTAATTCTTTTGACGATGATGGACACCATAGCAATTCAAAAATGCTACACAAGGTTGACAGTGAAAGTGGAAATGATTGTAGTGACGATGAGGAAAATACATTATTTGTCACTGCAGAGCCATCTCAACAAAGCCCCAGTCATCTTACTGAAGATGCCTGTGAAACTGAATCCAAAAGTTTGCCGACATCTACCGAAAATTTGATTTCTGCAGGAACTAGGTTGTTGGTTGACAGTTGTCCCTGCAATCTTTTATCTCAAATTTGCTCTTTGGCAATTGGGCTTCAAGACTGTGGCCTCACTACTGGGCAGACAAAGGGGGATCCTGCAAAATTTTGCAGGAGCAAAAGCCTTCAGTTGAGTACTTATGATATAGACAAATGTTCCAAAAAGGTGGTTGAGCTTCCGGTAGCAGGAGCTGCAGAGAAGAACCTTGGAACTGCCATCATTGGCTTGGCGTTGAAAGGTTCTGATCCTTTTATATTGCTTCCTGAGGGACAGGATGACAGAAGAGAAGTGGGCATCAGTGTTGTGAAGGCACCAACATGGGGAAGGAAAGGGAAAGGAAAGGACAAGATAGAAAGGAAGCTTGAGAGGTTGTGCAGAGAAGAAGACATGGAAGCAGTAGCAGGTTCCCGCCATTTCTCCACTCTTTCCCTTTCTTTATCTCACAACAGAACCCTGCGTTCTTCTTCTGCCAAATCAGTCAAGCTTTCTCCTTCTTCCACCAACGCTTCCTTATCTTCCAGAAACTGGTTCGCGAGAGAGGTATGGGGTTGGGTGAACTCCAACTCCAAGGGTGTGGTCGGGAGAAGGGACCTGCGCGGGTTGGTGGTGAGGGCTGAAATGTTTGGCCAATTGACAAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTCTAGAAGCCGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGGGTGAGACCGGATCAGCAATTGGTTAAGATTGTAAATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTTCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTGCAAGGAGTTGGGAAGACTACCGTCTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTGGTTGCTTGCGATGTATACAGACCTGCTGCTATTGACCAGCTTTCTATTTTGGGAAAACAGCCCTCAGATTCTGTTGCTACTACGACAAAACTGATGAAGAAGGTAGATGTTCCTGTCTACACAGCAGGTACCGATGTTAAACCTTCAGAAATTGCCAAACAAGGCTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACCGCCGGTAGACTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTTAAAAGGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCTGCAGCGTTAGTGACTACTTTCAATGTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGTGATTCAAGAGGTGGAGCGGCTTTGAGTGTCAAAGAGTCTGGCAAACTTCATACTCTAAATGTTTGGTCCTCAAATGAAGGTTGGGTTAAGAGCTTGGAATCCAATCCTAATTTTGGGTTACTTGTTAAGGAGACAAACTTCATGCTCCAAATGTTCAGTTCTTGGATGATGGTTGTGTTAAATCCTACATCAACTAATATGGCCAAAAGACTTTTTGTATCTGGAAAGCCAATTAAACTAGTAGGACGAGGGGAACGAATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGGATACTTGGAATGGGAGATGTTCTTTCTTTTGTAGAGAAGGCACAAGAAGTTATGCGTAAAGAAGATGCTGAGGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACTCGTACTGTTGCCAAAATGGGTTCCGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTTCTCAGATTAGAGACGCAGAGAAGAATTTGCTGAATATGGAAGCAATGATAGAAGCAATGACCCCCGAGGAGAGGGAAAAGCCGGAACTGTTGGCAGAATCCCCTGTCAGGAGAAAAAGAGTTGCTGTTGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTCGTAGCTCAGCTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGCGGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGAAGGAAGAGATCGGAATCAAGGAGTGTATTTGTGGACTCAACAACCGGAAGGCCAGCTCCTCGTGGTTTTGGGAGCAAAAGTTGA 3651 0.4459 MTEVLQLPSSSSCGGLTPNDGSHPSSLINAPTVEEGVLPQSPLDLEAEEEEEERKRERERDQLSILTLLIATFRKSLIGCSTTASSTSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRSPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGVVPDGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECAQLVRLLPPTEAALLDWAINLMADVAQMESLNKMNARNIAMVFAPNMTQWFLALLKIFCLPCKVTVLVKGYGRFMLQQWQCVFAPLILLLEMADPLTALMYAVQVMNFLKTLVVKTLREREESIVKSNPGPNLNSFDDDGHHSNSKMLHKVDSESGNDCSDDEENTLFVTAEPSQQSPSHLTEDACETESKSLPTSTENLISAGTRLLVDSCPCNLLSQICSLAIGLQDCGLTTGQTKGDPAKFCRSKSLQLSTYDIDKCSKKVVELPVAGAAEKNLGTAIIGLALKGSDPFILLPEGQDDRREVGISVVKAPTWGRKGKGKDKIERKLERLCREEDMEAVAGSRHFSTLSLSLSHNRTLRSSSAKSVKLSPSSTNASLSSRNWFAREVWGWVNSNSKGVVGRRDLRGLVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVNDELVQLMGGEVSELVFSKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVACDVYRPAAIDQLSILGKQPSDSVATTTKLMKKVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKESGKLHTLNVWSSNEGWVKSLESNPNFGLLVKETNFMLQMFSSWMMVVLNPTSTNMAKRLFVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRKEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPSQIRDAEKNLLNMEAMIEAMTPEEREKPELLAESPVRRKRVAVDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFVDSTTGRPAPRGFGSKS 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02331 1216 MobiDBLite consensus disorder prediction 1 59 - -
Vimu6g02331 1216 MobiDBLite consensus disorder prediction 1178 1216 - -
Vimu6g02331 1216 Gene3D - 655 744 IPR042101 -
Vimu6g02331 1216 MobiDBLite consensus disorder prediction 1 29 - -
Vimu6g02331 1216 CDD SRP_G 755 1021 - -
Vimu6g02331 1216 SUPERFAMILY Signal peptide-binding domain 1054 1155 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vimu6g02331 1216 SMART PBD_5 93 127 IPR000095 -
Vimu6g02331 1216 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 996 1009 IPR000897 GO:0005525|GO:0006614
Vimu6g02331 1216 Gene3D - 982 1035 IPR042101 -
Vimu6g02331 1216 Pfam Signal peptide binding domain 1054 1152 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vimu6g02331 1216 Pfam RhoGAP domain 155 288 IPR000198 GO:0007165
Vimu6g02331 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 1081 IPR027417 -
Vimu6g02331 1216 ProSiteProfiles Rho GTPase-activating proteins domain profile. 138 315 IPR000198 GO:0007165
Vimu6g02331 1216 PANTHER MKIAA1688 PROTEIN 1 421 IPR044785 GO:0005096
Vimu6g02331 1216 SUPERFAMILY GTPase activation domain, GAP 133 291 IPR008936 -
Vimu6g02331 1216 MobiDBLite consensus disorder prediction 1178 1197 - -
Vimu6g02331 1216 Pfam SRP54-type protein, GTPase domain 754 933 IPR000897 GO:0005525|GO:0006614
Vimu6g02331 1216 MobiDBLite consensus disorder prediction 410 433 - -
Vimu6g02331 1216 CDD RhoGAP 155 287 - -
Vimu6g02331 1216 Gene3D - 747 942 IPR027417 -
Vimu6g02331 1216 SMART SRP54_N_2 655 740 IPR013822 GO:0005525|GO:0006614
Vimu6g02331 1216 ProSiteProfiles CRIB domain profile. 93 106 IPR000095 -
Vimu6g02331 1216 SMART RhoGAP_3 152 320 IPR000198 GO:0007165
Vimu6g02331 1216 Gene3D Rho GTPase activation protein 122 290 IPR008936 -
Vimu6g02331 1216 Gene3D - 1036 1158 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vimu6g02331 1216 SMART SRP54_3 754 1023 IPR000897 GO:0005525|GO:0006614
Vimu6g02331 1216 Pfam SRP54-type protein, helical bundle domain 659 736 IPR013822 GO:0005525|GO:0006614
Vimu6g02331 1216 SMART AAA_5 753 914 IPR003593 GO:0016887
Vimu6g02331 1216 CDD CRIB 91 131 - -
Vimu6g02331 1216 Gene3D CRIB domain 87 121 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02331 Vimu-Chr6 20383199 20396384 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02331 K03106 - gmx:100783118 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02331 6 20383199 20396384 Vimu6g02331 6 20383199 20396384 ECH